Structure of PDB 6nbp Chain A Binding Site BS01

Receptor Information
>6nbp Chain A (length=246) Species: 553 (Pantoea ananatis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LTAQAQRLLVVSDNQELSLYLKEELEKQSFERPFNADFCYTSFNTNPQQM
MAMGATKINIKDEFTVERIINEYDLVFSLHCKQIFPAKLTDNVCCINFHP
GLNPYNRGWYPQAFSIINGLPTGATIHLMDADHGDIIDQQEVEVKMSDTS
LTVYRKVIAIEKHLISRNIFTIITRSYTTKKPQAEGNYNGIKDFNALCEL
DLNSIGTLDEHLKILRATTHGDFKNAFFCDEKGRRFFVRIVIDEAF
Ligand information
Ligand ID0FX
InChIInChI=1S/C16H27N3O14P2/c1-6-4-19(16(24)18-14(6)23)10-3-8(20)9(31-10)5-29-34(25,26)33-35(27,28)32-15-13(22)12(21)11(17)7(2)30-15/h4,7-13,15,20-22H,3,5,17H2,1-2H3,(H,25,26)(H,27,28)(H,18,23,24)/t7-,8+,9-,10-,11-,12+,13-,15-/m1/s1
InChIKeyUIVJXHWSIFBBCY-LPGAPTBISA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6CC1C(C(C(C(O1)OP(=O)(O)OP(=O)(O)OCC2C(CC(O2)N3C=C(C(=O)NC3=O)C)O)O)O)N
CACTVS 3.370C[CH]1O[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH](C[CH]2O)N3C=C(C)C(=O)NC3=O)[CH](O)[CH](O)[CH]1N
OpenEye OEToolkits 1.7.6C[C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)OP(=O)(O)OP(=O)(O)OC[C@@H]2[C@H](C[C@@H](O2)N3C=C(C(=O)NC3=O)C)O)O)O)N
CACTVS 3.370C[C@H]1O[C@H](O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H](C[C@@H]2O)N3C=C(C)C(=O)NC3=O)[C@H](O)[C@@H](O)[C@@H]1N
ACDLabs 12.01O=C1C(=CN(C(=O)N1)C2OC(C(O)C2)COP(=O)(OP(=O)(OC3OC(C(N)C(O)C3O)C)O)O)C
FormulaC16 H27 N3 O14 P2
NamedTDP-4-amino-4,6-dideoxyglucose
ChEMBL
DrugBank
ZINCZINC000030725213
PDB chain6nbp Chain A Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6nbp Investigation of a sugar N-formyltransferase from the plant pathogen Pantoea ananatis.
Resolution1.7 Å
Binding residue
(original residue number in PDB)		H92 C93 K94 G120 W121 Y122 Q124 Y168 H234 F237 N239
Binding residue
(residue number reindexed from 1)		H80 C81 K82 G108 W109 Y110 Q112 Y154 H220 F223 N225
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0004479 methionyl-tRNA formyltransferase activity
Biological Process
GO:0006413 translational initiation
GO:0009058 biosynthetic process
GO:0071951 conversion of methionyl-tRNA to N-formyl-methionyl-tRNA
Cellular Component
GO:0005829 cytosol

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6nbp, PDBe:6nbp, PDBj:6nbp
PDBsum6nbp
PubMed30666752
UniProtA0A4P1LYI6

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