Structure of PDB 6mwr Chain A Binding Site BS01

Receptor Information
>6mwr Chain A (length=265) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
THSLRYFRLGVSDPIHGVPEFISVGYVDSHPITTYDSVTRQKEPRAPWMA
ENLAPDHWERYTQLLRGWQQMFKVELKRLQRHYNHSGSHTYQRMIGCELL
EDGSTTGFLQYAYDGQDFLIFNKDTLSWLAVDNVAHTIKQAWEANQHELL
YQKNWLEEECIAWLKRFLEYGKDTLQRTEPPLVRVNRKETFPGVTALFCK
AHGFYPPEIYMTWMKNGEEIVQEIDYGDILPSGDGTYQAWASIELDPLYS
CHVEHSGVHMVLQVP
Ligand information
Ligand ID2LJ
InChIInChI=1S/C12H20N4O6/c1-2-3-13-8-10(15-12(22)16-11(8)21)14-4-6(18)9(20)7(19)5-17/h3,6-7,9,17-20H,2,4-5H2,1H3,(H3,14,15,16,21,22)/b13-3+/t6-,7+,9-/m0/s1
InChIKeyYCMPUNANLDFPQG-FHZGFTDOSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CCC=NC1=C(NC[C@H](O)[C@H](O)[C@H](O)CO)NC(=O)NC1=O
OpenEye OEToolkits 2.0.6CC/C=N/C1=C(NC(=O)NC1=O)NC[C@@H]([C@@H]([C@@H](CO)O)O)O
CACTVS 3.385CCC=NC1=C(NC[CH](O)[CH](O)[CH](O)CO)NC(=O)NC1=O
ACDLabs 12.01C1(=O)NC(NC(=C1\N=C\CC)NCC(O)C(O)C(O)CO)=O
OpenEye OEToolkits 2.0.6CCC=NC1=C(NC(=O)NC1=O)NCC(C(C(CO)O)O)O
FormulaC12 H20 N4 O6
Name1-deoxy-1-({2,6-dioxo-5-[(E)-propylideneamino]-1,2,3,6-tetrahydropyrimidin-4-yl}amino)-D-ribitol;
5-(2-oxopropylideneamino)-6-D-ribitylaminouracil
ChEMBL
DrugBank
ZINC
PDB chain6mwr Chain A Residue 600 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6mwr A class of gamma delta T cell receptors recognize the underside of the antigen-presenting molecule MR1.
Resolution3.3 Å
Binding residue
(original residue number in PDB)
Y7 R9 S24 K43 Y62 L66 W69 Q153 W156
Binding residue
(residue number reindexed from 1)
Y6 R8 S23 K42 Y61 L65 W68 Q152 W155
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:6mwr, PDBe:6mwr, PDBj:6mwr
PDBsum6mwr
PubMed31857486
UniProtQ95460|HMR1_HUMAN Major histocompatibility complex class I-related gene protein (Gene Name=MR1)

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