Structure of PDB 6mh5 Chain A Binding Site BS01

Receptor Information
>6mh5 Chain A (length=374) Species: 1295 (Staphylococcus schleiferi) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MKNIAILGASGSIGQQAIDVIARHPESFNLISFTVGKNIEFAIEVIEKFK
PEIVSVQDEADVERLKPYHSNIVSGRQGLIDVSTYEKNDLVLNALLGSVG
LEPTMKAIEAGKNIALANKETLVVAGKLVMTHAKRYGVDILPVDSEHAAI
FQCLNGEDMHKIKNVTITASGGSFRELTREQLEHVTVGDALNHPNWSMGN
KITIDSATMMNKGFEVIEAKWLFDLKIDQIKTILHKESIIHSLVEFVDTS
VMAQLGTPDMRMPIQYAFTYPERIEHRAPSLDLVQVAQLHFQEMDLDRYR
CLKFAYDALRIGGSMPVVLNAVNEVAVAKFLNHEITFLEIEHMIEREMSA
HEVIPDPSLEEILEIDHYYKTKSY
Ligand information
Ligand IDFOM
InChIInChI=1S/C4H10NO5P/c6-4-5(7)2-1-3-11(8,9)10/h4,7H,1-3H2,(H2,8,9,10)
InChIKeyGJXWDTUCERCKIX-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04O=P(O)(O)CCCN(O)C=O
OpenEye OEToolkits 1.5.0C(CN(C=O)O)CP(=O)(O)O
CACTVS 3.341ON(CCC[P](O)(O)=O)C=O
FormulaC4 H10 N O5 P
Name3-[FORMYL(HYDROXY)AMINO]PROPYLPHOSPHONIC ACID;
FOSMIDOMYCIN
ChEMBLCHEMBL203125
DrugBankDB02948
ZINCZINC000012502867
PDB chain6mh5 Chain A Residue 701 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6mh5 Potent, specific MEPicides for treatment of zoonotic staphylococci.
Resolution2.887 Å
Binding residue
(original residue number in PDB)		K119 E146 S170 N211 K212
Binding residue
(residue number reindexed from 1)		K119 E146 S170 N211 K212
Annotation score1
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sat Nov 16 07:36:42 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6mh5', asym_id = 'A', bs = 'BS01', title = 'Potent, specific MEPicides for treatment of zoonotic staphylococci.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6mh5', asym_id='A', bs='BS01', title='Potent, specific MEPicides for treatment of zoonotic staphylococci.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0008299,0030604,0046872,0070402', uniprot = '', pdbid = '6mh5', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0008299,0030604,0046872,0070402', uniprot='', pdbid='6mh5', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>