Structure of PDB 6m5z Chain A Binding Site BS01

Receptor Information
>6m5z Chain A (length=433) Species: 87693 (Talaromyces pinophilus CF-2612) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PTITVNPSTTYQTIDGFGFSEAFGFGAPIASASASIQTQVTNYLFSTTTG
AGLTILRNRIAAGSGSIEPNAPSGPNAQPTYTWDGNDAGQVWWSKQARAK
GVKYIYADAWSAPAFMKTNDNVANGGYLCGTTGETCSSGDWRQAYANYLV
QYIKDYANEGITIDFVGWLNEPDYSPNYDSMLITSGTQAASFIPTLYNTI
KSAGLSTGIACCDPFGWSDAVTWTAQLASAGATQYLARITSHWYASKGTS
PINTSLRVWETEYADLDDAFTTTWYSSGAANEGLTWANLIWQGVVEADLS
AFLYWIGAQSNSNAAGLVTLNGSTVQASGTLWAFAMFSRFIRPDAVRIST
SGSPSNVNVGAFKNADGSIVVVAINNNGNSETISLSGITASKVSAYYMDS
AVSSPSTFSATLNGGTVGGSLPARSMVTFVITT
Ligand information
Ligand IDMAN
InChIInChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5+,6+/m1/s1
InChIKeyWQZGKKKJIJFFOK-PQMKYFCFSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C(C1C(C(C(C(O1)O)O)O)O)O
CACTVS 3.341OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
CACTVS 3.341OC[C@H]1O[C@H](O)[C@@H](O)[C@@H](O)[C@@H]1O
OpenEye OEToolkits 1.5.0C([C@@H]1[C@H]([C@@H]([C@@H]([C@H](O1)O)O)O)O)O
ACDLabs 10.04OC1C(O)C(OC(O)C1O)CO
FormulaC6 H12 O6
Namealpha-D-mannopyranose;
alpha-D-mannose;
D-mannose;
mannose
ChEMBLCHEMBL365590
DrugBank
ZINCZINC000003860903
PDB chain6m5z Chain A Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6m5z Crystal structure of GH30-7 endoxylanase C from the filamentous fungus Talaromyces cellulolyticus.
Resolution1.65 Å
Binding residue
(original residue number in PDB)		A49 S53
Binding residue
(residue number reindexed from 1)		A27 S31
Annotation score5
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0004348 glucosylceramidase activity
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
Biological Process
GO:0006665 sphingolipid metabolic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:6m5z, PDBe:6m5z, PDBj:6m5z
PDBsum6m5z
PubMed32744245
UniProtA0A6N4SL16

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