BioLiP

Receptor Information

>6lrd Chain A (length=698) Species: 1299 (Deinococcus radiodurans) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

RPAHWLLAPPASRDALLATMREWQVSPPVAQVLCGRDLRTELLALPLELT
PNPALREAARHIVAAVREGKRIRIHGDYDADGVSATATLVLGLRAIGANV
HGFIPHRLNEGYGIHPDRVPEHAAAADLVVTVDCGVSNLDEVKSLLATGT
EVVVTDHHAPGENFPECLVVHPHLTPDYDPDRHNLTGAGVAYHLLWAVYE
ELGRPEPRALLPLATLGTVADVAPLLGENRALVRAGLAEMARTELPGLRA
LMNEKRVRQPTARDVAFILAPRINAAGRMGEADRALELLTTPSDHEAKSL
AAYLEIRNQERRKIQDDMFAQALQLADPNDPALVLTHDDWHAGVMGIVAS
KLVETFNRPVYIVAQGKGSVRSTPGISAVQGLRESRDLLGRFGGHPGAAG
FSLDPQNFGALRERIHGYVRQFPTPVPAVRLDAPLPVAALTPELLSELSI
LEPFGEGNPRPLWHLRGPLTDTRLVGKQGDVLQFRFGGVKGMKYSERDDA
AGERDVAAELALNTSLELHAAALRPLAPLALAGTEEGLPTLPRLNPREAM
TFLKTGAAAYAEQGVATYLRDNVPGLTLLDTNAPHPGGDLILYGLPPESA
LRRWLHEAQEQGGRVAFALGPKTLAELDAALTLAKLLPDSHTEAAQEAAA
DAYRSWQWAHHYRVLNDAGWSASVYAMLGLPVPAALPKAAEALALAAG

Receptor-Ligand Complex Structure

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Structure summary

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PDB	6lrd Participation of RecJ in the base excision repair pathway of Deinococcus radiodurans.
Resolution	1.90134 Å
Binding residue (original residue number in PDB)	D81 R109 Y114 D223 V224 F269 P273 R274 N276 R280 R313 R314 A344 M347 G348 I349 K353 E356 K369 G370 S371 R373 F394 G395 G396 H397 A400 A401 G402
Binding residue (residue number reindexed from 1)	D79 R107 Y112 D221 V222 F267 P271 R272 N274 R278 R311 R312 A342 M345 G346 I347 K351 E354 K367 G368 S369 R371 F392 G393 G394 H395 A398 A399 G400

Enzyme Commision number

	Molecular Function
GO:0003676	nucleic acid binding
GO:0004527	exonuclease activity
GO:0008409	5'-3' exonuclease activity
GO:0046872	metal ion binding

	Biological Process
GO:0006281	DNA repair
GO:0006310	DNA recombination

PDB	RCSB:6lrd, PDBe:6lrd, PDBj:6lrd
PDBsum	6lrd
PubMed	32870272
UniProt	D0EM60

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Structure of PDB 6lrd Chain A Binding Site BS01