Structure of PDB 6lna Chain A Binding Site BS01

Receptor Information
>6lna Chain A (length=463) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TLSFITRWRDELPATYTTLSPTPLNNARLIWHNAELANTLGIPSSLFKAG
VWGGETLLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQRLADGTTMD
WHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTS
DSPVYRETVEPGAMLMRVAPSHLRFGHFEHFYYRREPEKVRQLADFAIRH
YWSHLADDKYRLWFTDVVARTASLIAQWQTVGFAHGVMNTDNMSLLGLTL
DYGPFGFLDDYEPGFISNHSDHQGRYSFDNQPAVALWNLQRLAQTLSPFV
AVDALNEALDSYQQVLLTHYGQRMRQKLGFMTEQKEDNALLNELFSLMAR
ERSDYTRTFRMLSLTEQHSAASPLRDEFIDRAAFDDWFARYRGRLQQDEV
SDSERQQLMQSVNPALVLRNWLAQRAIEAAEKGDMTELHRLHEALRNPFS
DRDDDYVSRPPDW
Ligand information
Ligand IDMN
InChIInChI=1S/Mn/q+2
InChIKeyWAEMQWOKJMHJLA-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mn+2]
CACTVS 3.341[Mn++]
FormulaMn
NameMANGANESE (II) ION
ChEMBL
DrugBankDB06757
ZINC
PDB chain6lna Chain A Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6lna The YdiU Domain Modulates Bacterial Stress Signaling through Mn 2+ -Dependent UMPylation.
Resolution1.701 Å
Binding residue
(original residue number in PDB)		N247 D256
Binding residue
(residue number reindexed from 1)		N242 D251
Annotation score1
Enzymatic activity
Enzyme Commision number 2.7.7.108: protein adenylyltransferase.
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0005524 ATP binding
GO:0016779 nucleotidyltransferase activity
GO:0046872 metal ion binding
GO:0070733 AMPylase activity
Biological Process
GO:0018117 protein adenylylation

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:6lna, PDBe:6lna, PDBj:6lna
PDBsum6lna
PubMed32966796
UniProtP77649|SELO_ECOLI Protein adenylyltransferase SelO (Gene Name=selO)

[Back to BioLiP]