Structure of PDB 6l5r Chain A Binding Site BS01

Receptor Information
>6l5r Chain A (length=447) Species: 49827 (Glycyrrhiza glabra) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
HPVVHVALLPSAGMGHLTPFLRLASLLLHQHCHVTLITPQPTVSKAEEDL
LSRFLSAFPQVNQLHFHLPTDPFFLQFASIRSSSHLLTPLLSSLTPPLSS
FIYDMTLISPLLPIAESLGVPHYILFTSSATMFSFFSYFPTLAKSESFPG
KLDFVEIPGVSVSSIPRSSIPPPLLVPNSLFGKLFMEDSPKLKKLHGVLV
NTFEGIEKLSLEALNGGKVVKGLPPVYGVGPFVPCEFEKVETISEWLDEQ
PSGSVVYVSFGSRTAMGREQLREVGDGLVKSGWRFLWVVKDKIVDRAEEE
GLDGVLGFELVERMVKEKKGLVVKEWVDQSEILGHKAVGGFVSHCGWNSV
VEAAWFGVKILGWPLHGDQKINAEVVAKGGWGVWKEGWDWEGERLVKGEE
IGEAIREVMNDESLVMKATQVKKDARKAISVGGGCEVALQKLMEVWK
Ligand information
Ligand IDUDP
InChIInChI=1S/C9H14N2O12P2/c12-5-1-2-11(9(15)10-5)8-7(14)6(13)4(22-8)3-21-25(19,20)23-24(16,17)18/h1-2,4,6-8,13-14H,3H2,(H,19,20)(H,10,12,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1
InChIKeyXCCTYIAWTASOJW-XVFCMESISA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.0C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)(O)OP(=O)(O)O)O)O
CACTVS 3.370O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O
CACTVS 3.370O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O
OpenEye OEToolkits 1.7.0C1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)O)O)O
ACDLabs 12.01O=P(O)(O)OP(=O)(O)OCC2OC(N1C(=O)NC(=O)C=C1)C(O)C2O
FormulaC9 H14 N2 O12 P2
NameURIDINE-5'-DIPHOSPHATE
ChEMBLCHEMBL130266
DrugBankDB03435
ZINCZINC000004490939
PDB chain6l5r Chain A Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6l5r Functional Characterization and Structural Basis of an Efficient Di-C-glycosyltransferase fromGlycyrrhiza glabra.
Resolution2.89 Å
Binding residue
(original residue number in PDB)
G26 G283 S284 R285 W348 V349 Q351 H366 G368 N370 S371 E374
Binding residue
(residue number reindexed from 1)
G15 G261 S262 R263 W326 V327 Q329 H344 G346 N348 S349 E352
Annotation score4
Gene Ontology
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UnboundLocalError
Python 3.6.8: /usr/bin/python3
Sat Feb 22 13:04:58 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6l5r', asym_id = 'A', bs = 'BS01', title = 'Functional Characterization and Structural Basis... Di-C-glycosyltransferase fromGlycyrrhiza glabra.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6l5r', asym_id='A', bs='BS01', title='Functional Characterization and Structural Basis... Di-C-glycosyltransferase fromGlycyrrhiza glabra.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0008194,0035251', uniprot = '', pdbid = '6l5r', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0008194,0035251', uniprot='', pdbid='6l5r', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>