Structure of PDB 6k8w Chain A Binding Site BS01
Receptor Information
>6k8w Chain A (length=545) Species:
1300349
(Erythrobacter dokdonensis DSW-74) [
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PGRLAGKIAVVTGAAGNLGGHIVTHYLAEGATVVMTGRTPDRTKAAADAL
LKSTGADPSRLATVALDGGDIASVRAAIAEVVQKFGRIDILVNNAGSAGP
KQPIENLPLSPEELAALQKTGSTDSETVADALRNIFGVAWNVARVAAPHI
PEGGSIINVSTIFSRTPYYARAAYVVPKAAMNAWSRELSLELGPKGIRVN
LVYPGPIESERIRSVFAAMDAARGDEAGTTATQFFDMMSLERATGGNEKA
KTFPTPEDIATTCVFLGSDESAAYNGHDFEVTHGMSVRKEQRSTYLARPT
MRSMDGTGLAVLIAAGDDWEEALEIAQVQLACGAQVVLGLPRAADVAIAE
KRCKALGLTEGLSIIRFSRKDPAAMEAALEEYTRGGTPISGALFMPALGA
GELSGAVTEAEDNAVEALMDAELAGNMALARTMSRYWKRHDNLLQPPRFV
FVSHASDGKGDIYGHILRAATEQLIRIWRDESEIDTAHGRRRQAEWGNQI
VRFTNTEAENIRFTAGHAARILLKESKLGEITLYVPANIGEATGA
Ligand information
Ligand ID
NAP
InChI
InChI=1S/C21H28N7O17P3/c22-17-12-19(25-7-24-17)28(8-26-12)21-16(44-46(33,34)35)14(30)11(43-21)6-41-48(38,39)45-47(36,37)40-5-10-13(29)15(31)20(42-10)27-3-1-2-9(4-27)18(23)32/h1-4,7-8,10-11,13-16,20-21,29-31H,5-6H2,(H7-,22,23,24,25,32,33,34,35,36,37,38,39)/t10-,11-,13-,14-,15-,16-,20-,21-/m1/s1
InChIKey
XJLXINKUBYWONI-NNYOXOHSSA-N
SMILES
Software
SMILES
OpenEye OEToolkits 1.5.0
c1cc(c[n+](c1)C2C(C(C(O2)COP(=O)([O-])OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5N)OP(=O)(O)O)O)O)O)C(=O)N
CACTVS 3.341
NC(=O)c1ccc[n+](c1)[CH]2O[CH](CO[P]([O-])(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O[P](O)(O)=O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O
CACTVS 3.341
NC(=O)c1ccc[n+](c1)[C@@H]2O[C@H](CO[P]([O-])(=O)O[P@@](O)(=O)OC[C@H]3O[C@H]([C@H](O[P](O)(O)=O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O
OpenEye OEToolkits 1.5.0
c1cc(c[n+](c1)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)([O-])O[P@](=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)OP(=O)(O)O)O)O)O)C(=O)N
Formula
C21 H28 N7 O17 P3
Name
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE;
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE
ChEMBL
CHEMBL295069
DrugBank
DB03461
ZINC
PDB chain
6k8w Chain A Residue 1301 [
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Receptor-Ligand Complex Structure
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PDB
6k8w
Structural insight into bi-functional malonyl-CoA reductase.
Resolution
3.17 Å
Binding residue
(original residue number in PDB)
G30 G33 N34 L35 G54 R55 R59 N111 G113 N151 V155 T178 Y191 K195 I224
Binding residue
(residue number reindexed from 1)
G13 G16 N17 L18 G37 R38 R42 N94 G96 N134 V138 T161 Y174 K178 I207
Annotation score
4
Enzymatic activity
Enzyme Commision number
?
External links
PDB
RCSB:6k8w
,
PDBe:6k8w
,
PDBj:6k8w
PDBsum
6k8w
PubMed
31814251
UniProt
A0A1A7BFR5
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