Structure of PDB 6k8u Chain A Binding Site BS01
Receptor Information
>6k8u Chain A (length=662) Species:
1300349
(Erythrobacter dokdonensis DSW-74) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
FSENITGLHLGKVALITGGSAGIGGQVARLLALAGGKVMMVARRESELAV
ARARIVSELEDIGFAGVERRVQTLANVDVSNFESLKGAVDATLKAFGRID
YLINNAGVAGAEDMVVDMGVDAWDYTLDANLVSNYFLMHHVAPLMKAQGS
GYILNVSSYFGGEKYLAVAYPNRADYAVSKAGQRAMVESMARYLGPEVQF
NAIAPGPVDGDRLSGTGGKPGLFERRGKLILENKRLNAVHAAAIKAIRRG
VRVEAVLARLARNDTVKMSHDTNNPRELRELALACAREGDGTCTWDQYLL
TPQIAAALVSRLRQAGLFLDAPEWSERPVTEDGDWLLRVPPEDAPFLPAD
KIAAEAKKVGGGVLSKLYLGKMPTEHDVAQATVFFLADRAVSGETFMPSG
GLSVERSTTERELFGSPKQERLDQMRGKTVWIIGEHLVDYLAETARAFIE
DCHAANVVLITRTAEGFDAVEAQLDEDVAQSLTSLVVSSDIEAAMDEALS
QWGRPTTILSTPFTALPGKLFEAQDPLTPDEFREVVADNLTHHFRVSRRA
SLYDDCQLVLTSPDVAMGDKSPAFALANFIKTTLHAFTATLAVENERLVH
DVPVNQINLTRRVQSEEPRDLDEHLEEVRRFARAVLLVGAPLPDAEDSRY
RARIYRGMSMTV
Ligand information
Ligand ID
NAP
InChI
InChI=1S/C21H28N7O17P3/c22-17-12-19(25-7-24-17)28(8-26-12)21-16(44-46(33,34)35)14(30)11(43-21)6-41-48(38,39)45-47(36,37)40-5-10-13(29)15(31)20(42-10)27-3-1-2-9(4-27)18(23)32/h1-4,7-8,10-11,13-16,20-21,29-31H,5-6H2,(H7-,22,23,24,25,32,33,34,35,36,37,38,39)/t10-,11-,13-,14-,15-,16-,20-,21-/m1/s1
InChIKey
XJLXINKUBYWONI-NNYOXOHSSA-N
SMILES
Software
SMILES
OpenEye OEToolkits 1.5.0
c1cc(c[n+](c1)C2C(C(C(O2)COP(=O)([O-])OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5N)OP(=O)(O)O)O)O)O)C(=O)N
CACTVS 3.341
NC(=O)c1ccc[n+](c1)[CH]2O[CH](CO[P]([O-])(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O[P](O)(O)=O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O
CACTVS 3.341
NC(=O)c1ccc[n+](c1)[C@@H]2O[C@H](CO[P]([O-])(=O)O[P@@](O)(=O)OC[C@H]3O[C@H]([C@H](O[P](O)(O)=O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O
OpenEye OEToolkits 1.5.0
c1cc(c[n+](c1)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)([O-])O[P@](=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)OP(=O)(O)O)O)O)O)C(=O)N
Formula
C21 H28 N7 O17 P3
Name
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE;
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE
ChEMBL
CHEMBL295069
DrugBank
DB03461
ZINC
PDB chain
6k8u Chain A Residue 1301 [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
6k8u
Structural insight into bi-functional malonyl-CoA reductase.
Resolution
2.0 Å
Binding residue
(original residue number in PDB)
G586 S588 G590 I591 R611 R612 D646 V647 N673 V724 K748 G774 R780
Binding residue
(residue number reindexed from 1)
G18 S20 G22 I23 R43 R44 D78 V79 N105 V156 K180 G206 R212
Annotation score
4
Enzymatic activity
Enzyme Commision number
?
External links
PDB
RCSB:6k8u
,
PDBe:6k8u
,
PDBj:6k8u
PDBsum
6k8u
PubMed
31814251
UniProt
A0A1A7BFR5
[
Back to BioLiP
]