Structure of PDB 6k8a Chain A Binding Site BS01

Receptor Information
>6k8a Chain A (length=280) Species: 3702 (Arabidopsis thaliana) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SKISDNYSSLLQVSEALGRAGLESSNLIVGIDFTKSNEWTGAKSFNRKSL
HHLSNTPNPYEQAITIIGRTLAAFDEDNLIPCYGFGDASTHDQDVFSFYP
EGRFCNGFEEVLARYREIVPQLKLAGPTSFAPIIEMAMTVVEQSSGQYHV
LVIIADGQVTRSVDTEHGRLSPQEQKTVDAIVKASTLPLSIVLVGVGDGP
WDMMQEFDDNIPARAFDNFQFVNFTEIMSKNKDQSRKETEFALSALMEIP
PQYKATIELNLLGVRNGNIPQRIPLPPPVQ
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain6k8a Chain A Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6k8a RGLG1 VWA domain with MIDAS is occupied by water
Resolution2.4 Å
Binding residue
(original residue number in PDB)		D338 D347 F349 E378
Binding residue
(residue number reindexed from 1)		D208 D217 F219 E248
Annotation score4
Enzymatic activity
Enzyme Commision number 2.3.2.27: RING-type E3 ubiquitin transferase.
External links
PDB RCSB:6k8a, PDBe:6k8a, PDBj:6k8a
PDBsum6k8a
PubMed
UniProtQ9SS90|RGLG1_ARATH E3 ubiquitin-protein ligase RGLG1 (Gene Name=RGLG1)

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