Structure of PDB 6k20 Chain A Binding Site BS01

Receptor Information

>6k20 Chain A (length=465) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

TLSFITRWRDELPATYTTLSPTPLNNARLIWHNAELANTLGIPSSLFKNG
AGVWGGETLLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQRLADGTT
MDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIV
TSDSPVYRETVEPGAMLMRVAPSHLRFGHFEHFYYRREPEKVRQLADFAI
RHYWSHLADEDKYRLWFTDVVARTASLIAQWQTVGFAHGVMNTDNMSLLG
LTLDYGPFGFLDDYEPGFISNHSDHQGRYSFDNQPAVALWNLQRLAQTLS
PFVAVDALNEALDSYQQVLLTHYGQRMRQKLGFMTEQKEDNALLNELFSL
MARERSDYTRTFRMLSLTEQHSAASPLRDEFIDRAAFDDWFARYRGRLQQ
DEVSDSERQQLMQSVNPALVLRNWLAQRAIEAAEKGDMTELHRLHEALRN
PFSDRDDDYVSRPPD

Ligand information

Ligand ID

InChI

InChI=1S/Mg/q+2

InChIKey

JLVVSXFLKOJNIY-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mg+2]
CACTVS 3.341	[Mg++]

Formula

Name

MAGNESIUM ION

PDB chain

6k20 Chain A Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

Global view

Local view

Structure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

PDB	6k20 Structure of Apo-YdiU
Resolution	2.58 Å
Binding residue (original residue number in PDB)	N247 D256
Binding residue (residue number reindexed from 1)	N245 D254
Annotation score	1

Enzymatic activity

Enzyme Commision number

2.7.7.108: protein adenylyltransferase.

Gene Ontology

	Molecular Function
GO:0000287	magnesium ion binding
GO:0005524	ATP binding
GO:0016779	nucleotidyltransferase activity
GO:0046872	metal ion binding
GO:0070733	AMPylase activity

	Biological Process
GO:0018117	protein adenylylation

View graph for
Molecular Function

View graph for
Biological Process

External links

PDB	RCSB:6k20, PDBe:6k20, PDBj:6k20
PDBsum	6k20
PubMed
UniProt	P77649\|SELO_ECOLI Protein adenylyltransferase SelO (Gene Name=selO)

[Back to BioLiP]