Structure of PDB 6jer Chain A Binding Site BS01

Receptor Information

>6jer Chain A (length=170) Species: 1409923 (Acinetobacter baumannii MRSN 3527) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

LLPILSFPDPRLRTIAKPVEEVTDEIRQLAADMFETMYAAPGIGLAASQV
DRHIQLIVMDLSESKDEPMVFINPKVTPLTEETQPYEEGCLSVPQIYDKV
DRPSRVKIEAINLEGQAFEIEADGLLAVCIQHEMDHLNGKLFVDYLSPLK
RQRAREKVEKIVRQREREKV

Ligand information

Ligand ID

InChI

InChI=1S/Zn/q+2

InChIKey

PTFCDOFLOPIGGS-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Zn++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Zn+2]

Formula

Name

ZINC ION

PDB chain

6jer Chain A Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	6jer Expression, crystallization, and preliminary X-ray crystallographic analysis of peptide deformylase from Acinetobacter baumanii
Resolution	2.4 Å
Binding residue (original residue number in PDB)	C92 H134 H138
Binding residue (residue number reindexed from 1)	C90 H132 H136
Annotation score	1

Enzymatic activity

Catalytic site (original residue number in PDB)	G46 Q51 C92 L93 H134 E135 H138
Catalytic site (residue number reindexed from 1)	G44 Q49 C90 L91 H132 E133 H136
Enzyme Commision number	3.5.1.88: peptide deformylase.

Gene Ontology

	Molecular Function
GO:0016787	hydrolase activity
GO:0042586	peptide deformylase activity
GO:0046872	metal ion binding

	Biological Process
GO:0006412	translation
GO:0018206	peptidyl-methionine modification

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Molecular Function

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Biological Process

External links

PDB	RCSB:6jer, PDBe:6jer, PDBj:6jer
PDBsum	6jer
PubMed
UniProt	B0VNL8\|DEF_ACIBS Peptide deformylase (Gene Name=def)

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