Structure of PDB 6jdr Chain A Binding Site BS01

Receptor Information
>6jdr Chain A (length=430) Species: 28344 (Porcine reproductive and respiratory syndrome virus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SRMCGYCGAPAPYATACGLDVCVYHTHFHQHCPVIIWCGHPAGSGSCSEC
EPPLGKGTSPLDEVLEQVPYKPPRTVIMHVEQGLTPLDPGRYQTRRGLVS
VRRGIRGNEVDLPDGDYASTALLPTCKEINMVAVASNVLRSRFIIGPPGA
GKTHWLLQQVQDGDVIYTPTHQTMLDMIRALGTCRFNVPAGTTLQFPAPS
RTGPWVRILAGGWCPGKNSFLDEAAYCNHLDVLRLLSKTTLTCLGDFKQL
HPVGFDSHCYVFDIMPQTQLKTIWRFGQNICDAIQPDYRDKLMSMVNTTR
VTYVEKPVRYGQVLTPYHRDREDSAITIDSSQGATFDVVTLHLPTKDSLN
RQRALVAITRARHAIFVYDPHRQLQSVFDLPAKGTPVNLAVHRDEQLIVL
DRNNREITVAQALGNGDKFRATDKRVVDSL
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain6jdr Chain A Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6jdr Helicase of Type 2 Porcine Reproductive and Respiratory Syndrome Virus Strain HV Reveals a Unique Structure.
Resolution2.5 Å
Binding residue
(original residue number in PDB)		C20 H32 H34 C35
Binding residue
(residue number reindexed from 1)		C17 H29 H31 C32
Annotation score1
Enzymatic activity
Enzyme Commision number 3.6.4.13: RNA helicase.
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0008270 zinc ion binding

View graph for
Molecular Function
External links
PDB RCSB:6jdr, PDBe:6jdr, PDBj:6jdr
PDBsum6jdr
PubMed32075207
UniProtJ9XNG9

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