Structure of PDB 6ij9 Chain A Binding Site BS01

Receptor Information
>6ij9 Chain A (length=410) Species: 3702 (Arabidopsis thaliana) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KPHVLVIPFPQSGHMVPHLDLTHQILLRGATVTVLVTPKNSSYLDALRSL
HSPEHFKTLILPFPSHPCIPSGVESLQQLPLEAIVHMFDALSRLHDPLVD
FLSRQPPSDLPDAILGSSFLSPWINKVADAFSIKSISFLPINAHSISVMW
AQEDRSFFNDLETATTESYGLVINSFYDLEPEFVETVKTRFLNHHRIWTV
GPLLPFDRGGQSSIPPAKVSAWLDSCPEDNSVVYVGFGSQIRLTAEQTAA
LAAALEKSSVRFIWAVRDAAKKAGFEERVKEKGLVIRGWAPQTMILEHRA
VGSYLTHLGWGSVLEGMVGGVMLLAWPMQADHFFNTTLIVDKLRAAVRVG
ENRDSVPDSDKLARILAESAREDLPERVTLMKLREKAMEAIKEGGSSYKN
LDELVAEMCL
Ligand information
Ligand IDUDP
InChIInChI=1S/C9H14N2O12P2/c12-5-1-2-11(9(15)10-5)8-7(14)6(13)4(22-8)3-21-25(19,20)23-24(16,17)18/h1-2,4,6-8,13-14H,3H2,(H,19,20)(H,10,12,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1
InChIKeyXCCTYIAWTASOJW-XVFCMESISA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.0C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)(O)OP(=O)(O)O)O)O
CACTVS 3.370O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O
CACTVS 3.370O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O
OpenEye OEToolkits 1.7.0C1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)O)O)O
ACDLabs 12.01O=P(O)(O)OP(=O)(O)OCC2OC(N1C(=O)NC(=O)C=C1)C(O)C2O
FormulaC9 H14 N2 O12 P2
NameURIDINE-5'-DIPHOSPHATE
ChEMBLCHEMBL130266
DrugBankDB03435
ZINCZINC000004490939
PDB chain6ij9 Chain A Residue 900 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6ij9 Crystal Structure of Arabidopsis thaliana UGT89C1 complexed with UDP
Resolution3.0 Å
Binding residue
(original residue number in PDB)		G20 S250 W314 A315 Q317 H332 G336 S337 E340
Binding residue
(residue number reindexed from 1)		G13 S239 W289 A290 Q292 H307 G311 S312 E315
Annotation score3
Enzymatic activity
Enzyme Commision number 2.4.1.-
Gene Ontology
Molecular Function
GO:0008194 UDP-glycosyltransferase activity
GO:0016757 glycosyltransferase activity
Biological Process
GO:0051555 flavonol biosynthetic process
Cellular Component
GO:0005576 extracellular region
GO:0005829 cytosol

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6ij9, PDBe:6ij9, PDBj:6ij9
PDBsum6ij9
PubMed
UniProtQ9LNE6|U89C1_ARATH Flavonol 7-O-rhamnosyltransferase (Gene Name=UGT89C1)

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