Structure of PDB 6idv Chain A Binding Site BS01

Receptor Information
>6idv Chain A (length=425) Species: 316493 (Viola philippica) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
IGTRWAVLIAGSKGYHNYRHQADVCHMYQILRKGGVKDENIIVFMYDDIA
YNESNPFPGIIINKPGGENVYKGVPKDYTGEDINNVNFLAAILGNKSAII
GGSGKVLDTSPNDHIFIYYAHGAPGKIGMPSKPYLYADDLVDTLKQKAAT
GTYKSMVFYVEACNAGSMFEGLLPEGTNIYAMAASNSTEGSWITYCPGTP
DFPPEFDVCLGDLWSITFLEDCDAHNLRTETVHQQFELVKKKIAYASTVS
QYGDIPISKDSLSVYMGTDPANDNRTFVPLKVIHQHDADLYHIWCKYNMA
PEGSSKKIEAQKQLLELMSHRAHVDNSITLIGKLLFGVNKASKVLNTVRP
VGQPLVDDWQCLKAMIRTFETHCGSLSEYGMKHTLSFANMCNAGIQKEQL
AEAAAQACVTFPSNPYSSLAEGFSA
Ligand information
Ligand IDSNN
InChIInChI=1S/C4H6N2O2/c5-2-1-3(7)6-4(2)8/h2H,1,5H2,(H,6,7,8)/t2-/m0/s1
InChIKeyYDNMHDRXNOHCJH-REOHCLBHSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C1[C@@H](C(=O)NC1=O)N
OpenEye OEToolkits 1.5.0C1C(C(=O)NC1=O)N
CACTVS 3.341N[C@H]1CC(=O)NC1=O
ACDLabs 10.04O=C1NC(=O)C(N)C1
CACTVS 3.341N[CH]1CC(=O)NC1=O
FormulaC4 H6 N2 O2
NameL-3-AMINOSUCCINIMIDE
ChEMBL
DrugBankDB03487
ZINCZINC000005134830
PDB chain6idv Chain A Residue 505 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6idv Structural determinants for peptide-bond formation by asparaginyl ligases.
Resolution2.4 Å
Binding residue
(original residue number in PDB)		G61 H70 Y169 A170 H172 E212 Q343
Binding residue
(residue number reindexed from 1)		G11 H20 Y119 A120 H121 E161 Q285
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0004197 cysteine-type endopeptidase activity
GO:0008233 peptidase activity
Biological Process
GO:0006508 proteolysis
GO:0051603 proteolysis involved in protein catabolic process

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Molecular Function
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Biological Process
External links
PDB RCSB:6idv, PDBe:6idv, PDBj:6idv
PDBsum6idv
PubMed31123145
UniProtA0A509GV09

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