Structure of PDB 6i79 Chain A Binding Site BS01
Receptor Information
>6i79 Chain A (length=271) Species:
9606
(Homo sapiens) [
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HHHENLYFQGMEGGLGRAVCLLTGASRGFGRTLAPLLASLLSPGSVLVLS
ARNDEALRQLEAELGAERSGLRVVRVPADLGAEAGLQQLLGALRELPRPK
GLQRLLLINNAGSLGDVSKGFVDLSDSTQVNNYWALNLTSMLCLTSSVLK
AFPDSPGLNRTVVNISSLCALQPFKGWALYCAGKAARDMLFQVLALEEPN
VRVLNYAPGPLDTDMQQLARETSVDPDMRKGLQELKAKGKLVDCKVSAQK
LLSLLEKDEFKSGAHVDFYDK
Ligand information
Ligand ID
NAP
InChI
InChI=1S/C21H28N7O17P3/c22-17-12-19(25-7-24-17)28(8-26-12)21-16(44-46(33,34)35)14(30)11(43-21)6-41-48(38,39)45-47(36,37)40-5-10-13(29)15(31)20(42-10)27-3-1-2-9(4-27)18(23)32/h1-4,7-8,10-11,13-16,20-21,29-31H,5-6H2,(H7-,22,23,24,25,32,33,34,35,36,37,38,39)/t10-,11-,13-,14-,15-,16-,20-,21-/m1/s1
InChIKey
XJLXINKUBYWONI-NNYOXOHSSA-N
SMILES
Software
SMILES
OpenEye OEToolkits 1.5.0
c1cc(c[n+](c1)C2C(C(C(O2)COP(=O)([O-])OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5N)OP(=O)(O)O)O)O)O)C(=O)N
CACTVS 3.341
NC(=O)c1ccc[n+](c1)[CH]2O[CH](CO[P]([O-])(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O[P](O)(O)=O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O
CACTVS 3.341
NC(=O)c1ccc[n+](c1)[C@@H]2O[C@H](CO[P]([O-])(=O)O[P@@](O)(=O)OC[C@H]3O[C@H]([C@H](O[P](O)(O)=O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O
OpenEye OEToolkits 1.5.0
c1cc(c[n+](c1)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)([O-])O[P@](=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)OP(=O)(O)O)O)O)O)C(=O)N
Formula
C21 H28 N7 O17 P3
Name
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE;
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE
ChEMBL
CHEMBL295069
DrugBank
DB03461
ZINC
PDB chain
6i79 Chain A Residue 301 [
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Receptor-Ligand Complex Structure
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PDB
6i79
Fragment-Based Discovery of Novel Potent Sepiapterin Reductase Inhibitors.
Resolution
1.63 Å
Binding residue
(original residue number in PDB)
G14 S16 R17 G18 F19 R42 N43 D69 L70 N100 L126 I155 S156 Y170 K174 P198 P200 L201 T203 M205
Binding residue
(residue number reindexed from 1)
G24 S26 R27 G28 F29 R52 N53 D79 L80 N110 L136 I165 S166 Y180 K184 P208 P210 L211 T213 M215
Annotation score
4
Enzymatic activity
Enzyme Commision number
1.1.1.153
: sepiapterin reductase (L-erythro-7,8-dihydrobiopterin forming).
Gene Ontology
Molecular Function
GO:0004033
aldo-keto reductase (NADPH) activity
GO:0004757
sepiapterin reductase (NADP+) activity
GO:0016491
oxidoreductase activity
GO:0050661
NADP binding
Biological Process
GO:0006729
tetrahydrobiopterin biosynthetic process
GO:0006809
nitric oxide biosynthetic process
Cellular Component
GO:0005654
nucleoplasm
GO:0005737
cytoplasm
GO:0005739
mitochondrion
GO:0005829
cytosol
GO:0070062
extracellular exosome
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Molecular Function
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Biological Process
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Cellular Component
External links
PDB
RCSB:6i79
,
PDBe:6i79
,
PDBj:6i79
PDBsum
6i79
PubMed
31244106
UniProt
P35270
|SPRE_HUMAN Sepiapterin reductase (Gene Name=SPR)
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