Structure of PDB 6hzp Chain A Binding Site BS01

Receptor Information
>6hzp Chain A (length=487) Species: 1290 (Staphylococcus hominis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QTIQSIPQKGFFGHPRGLGVLFFVEFWERFSYYGMRAMLIFYMYFAIHQN
GLGIDKTTAMSIMSVYGALIYMSSIPGAWIADRITGTRGATLLGAVLIII
GHICLSLPFALFGLFSSMFFIIIGSGLMKPNISNIVGRLYPENDTRIDAG
FVIFYMSVNLGALISPIILQHFVDIRNFHGGFLLAAIGMALGLVWYLLFN
RKNLGSVGMKPTNPLSKEEKRKYGMIIGIIVAIVIVVLLVTYYTHTLSFD
LISNTVLVLGVALPIIYFTTMLRSKDVTDGERSRVKAFIPLFILGMLFWS
IQEQGSNVLNIYGLERSDMQLNLFGWTTRFGEALFQSINPLFILLFAPVI
SMIWLKMGKKQPSLAIKFSIGTLLAGLSYILIGLVGLGYGHTQFSVNWVI
LSYVICVIGELCLSPTGNSAAVKLAPKAFNAQMMSVWLLTNASAQAINGT
LVKLIKPLGQTNYFIFLGTVAIVITLIILVFSPKITK
Ligand information
Ligand IDFVT
InChIInChI=1S/C5H9NO3/c6-3-4(7)1-2-5(8)9/h1-3,6H2,(H,8,9)
InChIKeyZGXJTSGNIOSYLO-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.6C(CC(=O)O)C(=O)CN
CACTVS 3.385NCC(=O)CCC(O)=O
FormulaC5 H9 N O3
Name5-azanyl-4-oxidanylidene-pentanoic acid
ChEMBLCHEMBL601
DrugBankDB00855
ZINCZINC000003782550
PDB chain6hzp Chain A Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6hzp Structural basis for prodrug recognition by the SLC15 family of proton-coupled peptide transporters.
Resolution2.5 Å
Binding residue
(original residue number in PDB)		N167 N347
Binding residue
(residue number reindexed from 1)		N159 N339
Annotation score1
Binding affinityPDBbind-CN: -logKd/Ki=1.98,IC50=10.4mM
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Mon Nov 25 01:26:15 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6hzp', asym_id = 'A', bs = 'BS01', title = 'Structural basis for prodrug recognition by the SLC15 family of proton-coupled peptide transporters.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6hzp', asym_id='A', bs='BS01', title='Structural basis for prodrug recognition by the SLC15 family of proton-coupled peptide transporters.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0006857,0015833,0016020,0022857,0055085,1904680', uniprot = '', pdbid = '6hzp', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0006857,0015833,0016020,0022857,0055085,1904680', uniprot='', pdbid='6hzp', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>