Structure of PDB 6hdi Chain A Binding Site BS01

Receptor Information

>6hdi Chain A (length=220) Species: 272623 (Lactococcus lactis subsp. lactis Il1403)

MFKAVLFDLDGVITDTAEYHFRAWKALAEEIGINGVDRQFNEQLKGVSAE
DSLQKILDLADKKVSAEEFKELAKRKNDNYVKMIQDVSPADVYPGILQLL
KDLRSNKIKIALASASKNGPFLLERMNLTGYFDAIADPAEVAASKPAPDI
FIAAAHAVGVAPSESIGLEDSQAGIQAIKDSGALPIGVGRPEDLGDDIVI
VPDTSHYTLEFLKEVWLQKQ

Ligand information

• Ligand ID: MG
• InChI: InChI=1S/Mg/q+2
• InChIKey: JLVVSXFLKOJNIY-UHFFFAOYSA-N
• SMILES:
  ACDLabs 10.04
  OpenEye OEToolkits 1.5.0: [Mg+2]
  CACTVS 3.341: [Mg++]
• Formula: Mg
• Name: MAGNESIUM ION
• DrugBank: DB01378
• PDB chain: 6hdi Chain A Residue 301

Receptor-Ligand Complex Structure

Structure summary

• PDB: 6hdi Transition state of phospho-enzyme hydrolysis in beta-phosphoglucomutase.
• Resolution: 2.03 Å
• Binding residue (original residue number in PDB): D8 D10 E169 D170
• Binding residue (residue number reindexed from 1): D8 D10 E169 D170
• Annotation score: 1

Enzymatic activity

• Catalytic site (original residue number in PDB): D8 L9 D10 T16 K45 S114 A115 K145 E169 D170
• Catalytic site (residue number reindexed from 1): D8 L9 D10 T16 K45 S114 A115 K145 E169 D170
• Enzyme Commision number: 5.4.2.6: beta-phosphoglucomutase.

Gene Ontology

Molecular Function

• GO:0000287 magnesium ion binding
• GO:0008801 beta-phosphoglucomutase activity
• GO:0016853 isomerase activity
• GO:0046872 metal ion binding

Biological Process

• GO:0005975 carbohydrate metabolic process

Cellular Component

• GO:0005737 cytoplasm

External links

• PDB: RCSB:6hdi, PDBe:6hdi, PDBj:6hdi
• PDBsum: 6hdi
• UniProt: P71447|PGMB_LACLA Beta-phosphoglucomutase (Gene Name=pgmB)