Structure of PDB 6gl9 Chain A Binding Site BS01

Receptor Information
>6gl9 Chain A (length=292) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QDPTIFEERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSG
PDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLR
DFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRALAARNILVESEA
HVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVW
SFGVVLYELFTYCDKSCSPSAEFLRMMGSERDVPALSRLLELLEEGQRLP
APPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSGSR
Ligand information
Ligand IDF3W
InChIInChI=1S/C23H21N5/c24-12-5-7-16-6-4-8-17(14-16)23-27-20-15-26-22-19(11-13-25-22)21(20)28(23)18-9-2-1-3-10-18/h4-8,11,13-15,18H,1-3,9-10H2,(H,25,26)/b7-5+
InChIKeyJIDRJSPIWPPOBL-FNORWQNLSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.6c1cc(cc(c1)c2nc3cnc4c(c3n2C5CCCCC5)cc[nH]4)/C=C/C#N
OpenEye OEToolkits 2.0.6c1cc(cc(c1)c2nc3cnc4c(c3n2C5CCCCC5)cc[nH]4)C=CC#N
CACTVS 3.385N#C\C=C\c1cccc(c1)c2nc3cnc4[nH]ccc4c3n2C5CCCCC5
CACTVS 3.385N#CC=Cc1cccc(c1)c2nc3cnc4[nH]ccc4c3n2C5CCCCC5
FormulaC23 H21 N5
Name(~{E})-3-[3-(3-cyclohexyl-3,5,8,10-tetrazatricyclo[7.3.0.0^{2,6}]dodeca-1(9),2(6),4,7,11-pentaen-4-yl)phenyl]prop-2-enenitrile
ChEMBLCHEMBL4129641
DrugBank
ZINC
PDB chain6gl9 Chain A Residue 1201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6gl9 Development, Optimization, and Structure-Activity Relationships of Covalent-Reversible JAK3 Inhibitors Based on a Tricyclic Imidazo[5,4- d]pyrrolo[2,3- b]pyridine Scaffold.
Resolution1.7 Å
Binding residue
(original residue number in PDB)		L828 V836 A853 Y904 L905 C909 R911 R953 L956
Binding residue
(residue number reindexed from 1)		L17 V25 A42 Y93 L94 C98 R100 R142 L145
Annotation score1
Binding affinityMOAD: ic50=135nM
PDBbind-CN: -logKd/Ki=6.87,Kd=135nM
BindingDB: IC50=135nM
Enzymatic activity
Catalytic site (original residue number in PDB) A949 A951 R953 N954 D967
Catalytic site (residue number reindexed from 1) A138 A140 R142 N143 D156
Enzyme Commision number 2.7.10.2: non-specific protein-tyrosine kinase.
Gene Ontology
Molecular Function
GO:0004672 protein kinase activity
GO:0005524 ATP binding
Biological Process
GO:0006468 protein phosphorylation

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Molecular Function
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Biological Process
External links
PDB RCSB:6gl9, PDBe:6gl9, PDBj:6gl9
PDBsum6gl9
PubMed29852068
UniProtP52333|JAK3_HUMAN Tyrosine-protein kinase JAK3 (Gene Name=JAK3)

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