Structure of PDB 6gh7 Chain A Binding Site BS01

Receptor Information
>6gh7 Chain A (length=120) Species: 1895 (Streptomyces avidinii) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AGITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVLTGRYDSAP
ATDGSGTALGWTVAWKNNYRNAHSATTWSGQYVGGAEARINTQWLLTSGT
TEANAWKSTLVGHDTFTKVK
Ligand information
Ligand IDEYW
InChIInChI=1S/C14H24N4O2S/c19-12(16-9-5-6-15-7-9)4-2-1-3-11-13-10(8-21-11)17-14(20)18-13/h9-11,13,15H,1-8H2,(H,16,19)(H2,17,18,20)/t9-,10+,11+,13+/m1/s1
InChIKeyQSMYOZNFIUDGEL-BLFANLJRSA-N
SMILES
SoftwareSMILES
CACTVS 3.385O=C(CCCC[C@@H]1SC[C@@H]2NC(=O)N[C@H]12)N[C@@H]3CCNC3
CACTVS 3.385O=C(CCCC[CH]1SC[CH]2NC(=O)N[CH]12)N[CH]3CCNC3
OpenEye OEToolkits 2.0.6C1CNCC1NC(=O)CCCCC2C3C(CS2)NC(=O)N3
OpenEye OEToolkits 2.0.6C1CNC[C@@H]1NC(=O)CCCC[C@H]2[C@@H]3[C@H](CS2)NC(=O)N3
FormulaC14 H24 N4 O2 S
Name5-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]-~{N}-[(3~{R})-pyrrolidin-3-yl]pentanamide
ChEMBL
DrugBank
ZINC
PDB chain6gh7 Chain A Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6gh7 Reactivity and Selectivity of Iminium Organocatalysis Improved by a Protein Host.
Resolution1.08 Å
Binding residue
(original residue number in PDB)
N23 L25 S27 Y43 S45 V47 N49 W79 S88 T90 W108 S112 D128
Binding residue
(residue number reindexed from 1)
N9 L11 S13 Y29 S31 V33 N35 W65 S74 T76 W94 S98 D114
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology

View graph for
Molecular Function
External links
PDB RCSB:6gh7, PDBe:6gh7, PDBj:6gh7
PDBsum6gh7
PubMed30027571
UniProtP22629|SAV_STRAV Streptavidin

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