Structure of PDB 6g4f Chain A Binding Site BS01

Receptor Information
>6g4f Chain A (length=451) Species: 306 (Pseudomonas sp.) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SSLPEKDIQYQLHPYTNARLHQELGPLIIERGEGIYVYDDQGKGYIEAMA
GLWSAALGFSNQRLIKAAEQQFNTLPFYHLFSHKSHRPSIELAEKLIEMA
PVPMSKVFFTNSGSEANDTVVKMVWYLNNALGKPAKKKFISRVNGYHGIT
VASASLTGLPGNQRGFDLPLPGFLHVGCPHHYRFALAGESEEHFADRLAV
ELEQKILAEGPETIAAFIGEPLMGAGGVIVPPRTYWEKIQKVCRKYDILV
IADEVICGFGRTGQMFGSQTFGIQPDIMVLSKQLSSSYQPIAAILINAPV
FEGIADQSQALGALGHGFTGSGHPVATAVALENLKIIEEESLVEHAAQMG
QLLRSGLQHFIDHPLVGEIRGCGLIAAVELVGDRVSKAPYQALGTLGRYM
AGRAQEHGMITRAMGDAVAFCPPLIVNEQEVGMIVERFARALDDTTQWVG
P
Ligand information
Ligand IDPMP
InChIInChI=1S/C8H13N2O5P/c1-5-8(11)7(2-9)6(3-10-5)4-15-16(12,13)14/h3,11H,2,4,9H2,1H3,(H2,12,13,14)
InChIKeyZMJGSOSNSPKHNH-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04O=P(O)(O)OCc1cnc(c(O)c1CN)C
OpenEye OEToolkits 1.5.0Cc1c(c(c(cn1)COP(=O)(O)O)CN)O
CACTVS 3.341Cc1ncc(CO[P](O)(O)=O)c(CN)c1O
FormulaC8 H13 N2 O5 P
Name4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE;
PYRIDOXAMINE-5'-PHOSPHATE
ChEMBLCHEMBL1235353
DrugBankDB02142
ZINCZINC000001532708
PDB chain6g4f Chain A Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6g4f Biochemical properties of a Pseudomonas aminotransferase involved in caprolactam metabolism.
Resolution2.5 Å
Binding residue
(original residue number in PDB)		S117 G118 S119 Y151 H152 E225 D258 V260 I261 K287
Binding residue
(residue number reindexed from 1)		S112 G113 S114 Y146 H147 E220 D253 V255 I256 K282
Annotation score4
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Wed Dec 18 15:11:47 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6g4f', asym_id = 'A', bs = 'BS01', title = 'Biochemical properties of a Pseudomonas aminotransferase involved in caprolactam metabolism.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6g4f', asym_id='A', bs='BS01', title='Biochemical properties of a Pseudomonas aminotransferase involved in caprolactam metabolism.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0008483,0030170', uniprot = '', pdbid = '6g4f', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0008483,0030170', uniprot='', pdbid='6g4f', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>