Structure of PDB 6f5o Chain A Binding Site BS01

Receptor Information

>6f5o Chain A (length=716) Species: 1601067 (Influenza B virus (B/Memphis/13/2003))

SMDTFITRNFQTTIIQKAKNTMAEFSEDPELQPAMLFNICVHLEVCYVIS
DMNFLDEEGKAYTAQNLRPQYEVIEGMPRTIAWMVQRSLAQEHGIETPKY
LADLFDYKTKRFIEVGITKGLADDYFWKKKEKLGNSMELMIFSYNQDYSL
SNESSLDEEGKGRVLSRLTELQAELSLKNLWQVLIGEEDVEKGIDFKLGQ
TISRLRDISVPAGFSNFEGMRSYIDNIDPKGAIERNLARMSPLVSVTPKK
LTWEDLRPIGPHIYNHELPEVPYNAFLLMSDELGLANMTEGKSKKPKTLA
KECLEKYSTLRDQTDPILIMKSEKANENFLWKLWRDCVNTISNEEMSNEL
QKTNYAKWATGDGLTYQKIMKEVAIDDETMCQEEPKIPNKCRVAAWVQTE
MNLLSTLTSKRALDLPEIGPDVAPVEHVGSERRKYFVNEINYCKASTVMM
KYVLFHTSLLNESNASMGKYKVIPITNRVVNEKGESFDMLYGLAVKGQSH
LRGDTDVVTVVTFEFSSTDPRVDSGKWPKYTVFRIGSLFVSGREKSVYLY
CRVNGTNKIQMKWGMEARRCLLQSMQQMEAIVEQESSIQGYDMTKACFKG
DRVNSPKTFSIGTQEGKLVKGSFGKALRVIFTKCLMHYVFGNAQLEGFSA
ESRRLLLLIQALKDRKGPWVFDLEGMYSGIEECISNNPWVIQSAYWFNEW
LGFEKEGSKVLESVDE

Ligand information

>6f5o Chain R (length=14)

uauaccucugcuuc

..............

Receptor-Ligand Complex Structure

Structure summary

• PDB: 6f5o A Mechanism for the Activation of the Influenza Virus Transcriptase.
• Resolution: 9.8 Å
• Binding residue (original residue number in PDB): M473 H506 L507 R508
• Binding residue (residue number reindexed from 1): M467 H500 L501 R502

Enzymatic activity

• Enzyme Commision number: 3.1.-.-

Gene Ontology

Molecular Function

• GO:0003723 RNA binding
• GO:0004519 endonuclease activity
• GO:0046872 metal ion binding

Biological Process

• GO:0006351 DNA-templated transcription
• GO:0039523 symbiont-mediated suppression of host mRNA transcription via inhibition of RNA polymerase II activity
• GO:0039694 viral RNA genome replication
• GO:0075526 cap snatching

Cellular Component

• GO:0030430 host cell cytoplasm
• GO:0042025 host cell nucleus

External links

• PDB: RCSB:6f5o, PDBe:6f5o, PDBj:6f5o
• PDBsum: 6f5o
• PubMed: 29910112
• UniProt: Q5V8Z9