Structure of PDB 6eyi Chain A Binding Site BS01

Receptor Information
>6eyi Chain A (length=280) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
WSYNTSTEAMTYDEASAYCQQRYTHLVAIQNKEEIEYLNSILSYSPSYYW
IGIRKVNNVWVWVGTQKPLTEEAKNWAPGEPNNRQKDEDCVEIYIKREKD
VGMWNDERCSKKKLALCYTAACTNTSCSGHGECVETINNYTCKCDPGFSG
LKCEQIVNCTALESPEHGSLVCSHPLGNFSYNSSCSISCDRGYLPSSMET
MQCMSSGEWSAPIPACNVVECDAVTNPANGFVECFQNPGSFPWNTTCTFD
CEEGFELMGAQSLQCTSSGNWDNEKPTCKA
Ligand information
Ligand IDC4Z
InChIInChI=1S/C27H46O13/c1-13-19(29)21(31)22(32)26(36-13)38-15-9-5-6-10-16(15)39-27-23(33)24(20(30)18(12-28)40-27)37-17(25(34)35)11-14-7-3-2-4-8-14/h13-24,26-33H,2-12H2,1H3,(H,34,35)/t13-,15+,16+,17+,18+,19+,20-,21+,22-,23+,24-,26-,27+/m0/s1
InChIKeyGNTJIZLFEURZBX-AUCBMRIBSA-N
SMILES
SoftwareSMILES
CACTVS 3.385C[CH]1O[CH](O[CH]2CCCC[CH]2O[CH]3O[CH](CO)[CH](O)[CH](O[CH](CC4CCCCC4)C(O)=O)[CH]3O)[CH](O)[CH](O)[CH]1O
CACTVS 3.385C[C@@H]1O[C@@H](O[C@@H]2CCCC[C@H]2O[C@@H]3O[C@H](CO)[C@H](O)[C@H](O[C@H](CC4CCCCC4)C(O)=O)[C@H]3O)[C@@H](O)[C@H](O)[C@@H]1O
OpenEye OEToolkits 2.0.6CC1C(C(C(C(O1)OC2CCCCC2OC3C(C(C(C(O3)CO)O)OC(CC4CCCCC4)C(=O)O)O)O)O)O
OpenEye OEToolkits 2.0.6C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)O[C@@H]2CCCC[C@H]2O[C@H]3[C@@H]([C@H]([C@H]([C@H](O3)CO)O)O[C@H](CC4CCCCC4)C(=O)O)O)O)O)O
FormulaC27 H46 O13
Name
ChEMBLCHEMBL1206429
DrugBank
ZINCZINC000049600074
PDB chain6eyi Chain A Residue 308 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6eyi E-selectin lectin with different glycomimetic ligands
Resolution2.04 Å
Binding residue
(original residue number in PDB)		Y48 E80 N82 Q85 E88 E92 Y94 R97 E98 N105 E107
Binding residue
(residue number reindexed from 1)		Y48 E80 N82 Q85 E88 E92 Y94 R97 E98 N105 E107
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Cellular Component
GO:0016020 membrane

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Biological Process
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Cellular Component
External links
PDB RCSB:6eyi, PDBe:6eyi, PDBj:6eyi
PDBsum6eyi
PubMed
UniProtP16581|LYAM2_HUMAN E-selectin (Gene Name=SELE)

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