Structure of PDB 6eux Chain A Binding Site BS01

Receptor Information
>6eux Chain A (length=225) Species: 1601067 (Influenza B virus (B/Memphis/13/2003)) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SQSMIVACRKIIRRSIVPLELAVEIANVACDIIRAALGRQRFGRLELKRI
SGRGFKNDEEILIGNGTIQKIGIWDGEEEFHVRCGECRGILKKSKMKLEK
LLINSAKKEDMRDLIILCMVFSQDTRMFQGVRGEINFLNRAGQLLSPMYQ
LQRYFLNRSNDLFDQWGYEESPKASELHGINESMNASDYTLKGVVVTRNV
IDDFITKNLSLIKRTGEVIMGANDV
Ligand information
Ligand IDBYB
InChIInChI=1S/C19H18F2N6O2/c20-10-5-11-15(26-27-16(11)22-6-10)18-23-7-12(21)17(25-18)24-14-9-3-1-8(2-4-9)13(14)19(28)29/h5-9,13-14H,1-4H2,(H,28,29)(H,22,26,27)(H,23,24,25)/t8-,9+,13-,14-/m0/s1
InChIKeyYCNZDZZTLLGBPM-WAYYCVMKSA-N
SMILES
SoftwareSMILES
CACTVS 3.385OC(=O)[C@H]1C2CCC(CC2)[C@@H]1Nc3nc(ncc3F)c4n[nH]c5ncc(F)cc45
OpenEye OEToolkits 2.0.6c1c(cnc2c1c(n[nH]2)c3ncc(c(n3)N[C@@H]4[C@H](C5CCC4CC5)C(=O)O)F)F
OpenEye OEToolkits 2.0.6c1c(cnc2c1c(n[nH]2)c3ncc(c(n3)NC4C5CCC(C4C(=O)O)CC5)F)F
CACTVS 3.385OC(=O)[CH]1C2CCC(CC2)[CH]1Nc3nc(ncc3F)c4n[nH]c5ncc(F)cc45
FormulaC19 H18 F2 N6 O2
Name(2~{S},3~{S})-3-[[5-fluoranyl-2-(5-fluoranyl-1~{H}-pyrazolo[3,4-b]pyridin-3-yl)pyrimidin-4-yl]amino]bicyclo[2.2.2]octane-2-carboxylic acid
ChEMBL
DrugBank
ZINC
PDB chain6eux Chain A Residue 601 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6eux Capped RNA primer binding to influenza polymerase and implications for the mechanism of cap-binding inhibitors.
Resolution2.05 Å
Binding residue
(original residue number in PDB)
Q325 W359 E363 K378 F406 E511
Binding residue
(residue number reindexed from 1)
Q40 W74 E78 K93 F121 E217
Annotation score1
Binding affinityPDBbind-CN: -logKd/Ki=5.92,Kd=1.2uM
Enzymatic activity
Enzyme Commision number ?
External links