Structure of PDB 6euw Chain A Binding Site BS01

Receptor Information
>6euw Chain A (length=156) Species: 365107 (Influenza A virus (A/duck/Shantou/4610/2003(H5N1))) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ISSSFSFGGFTFKRTSGSSVKKEEEVLTGNLQTLKIRVHEGYEEFTMVGR
RATAILRKATRRLIQLIVSGRDEQSIAEAIIVAMVFSQEDCMIKAVRGDL
NLNPMHQLLRHFQKDAKVLFQNWGIEPIDNVMGMIGILPDMTPSTEMSLR
GVRVSK
Ligand information
Ligand IDBYB
InChIInChI=1S/C19H18F2N6O2/c20-10-5-11-15(26-27-16(11)22-6-10)18-23-7-12(21)17(25-18)24-14-9-3-1-8(2-4-9)13(14)19(28)29/h5-9,13-14H,1-4H2,(H,28,29)(H,22,26,27)(H,23,24,25)/t8-,9+,13-,14-/m0/s1
InChIKeyYCNZDZZTLLGBPM-WAYYCVMKSA-N
SMILES
SoftwareSMILES
CACTVS 3.385OC(=O)[C@H]1C2CCC(CC2)[C@@H]1Nc3nc(ncc3F)c4n[nH]c5ncc(F)cc45
OpenEye OEToolkits 2.0.6c1c(cnc2c1c(n[nH]2)c3ncc(c(n3)N[C@@H]4[C@H](C5CCC4CC5)C(=O)O)F)F
OpenEye OEToolkits 2.0.6c1c(cnc2c1c(n[nH]2)c3ncc(c(n3)NC4C5CCC(C4C(=O)O)CC5)F)F
CACTVS 3.385OC(=O)[CH]1C2CCC(CC2)[CH]1Nc3nc(ncc3F)c4n[nH]c5ncc(F)cc45
FormulaC19 H18 F2 N6 O2
Name(2~{S},3~{S})-3-[[5-fluoranyl-2-(5-fluoranyl-1~{H}-pyrazolo[3,4-b]pyridin-3-yl)pyrimidin-4-yl]amino]bicyclo[2.2.2]octane-2-carboxylic acid
ChEMBL
DrugBank
ZINC
PDB chain6euw Chain A Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6euw Capped RNA primer binding to influenza polymerase and implications for the mechanism of cap-binding inhibitors.
Resolution1.0 Å
Binding residue
(original residue number in PDB)
I319 S320 F323 R332 H357 E361 F363 K376 F404 Q406 M427 H428
Binding residue
(residue number reindexed from 1)
I1 S2 F5 R14 H39 E43 F45 K58 F86 Q88 M105 H106
Annotation score1
Binding affinityMOAD: Kd=0.017uM
PDBbind-CN: -logKd/Ki=7.77,Kd=0.017uM
Enzymatic activity
Enzyme Commision number ?
External links