Structure of PDB 6dgm Chain A Binding Site BS01

Receptor Information

>6dgm Chain A (length=381) Species: 293653 (Streptococcus pyogenes MGAS5005) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

GAMEKPTNYSQETIASIAQKYQKLAEDINKDRKNNIADQTVIYLLSESLS
DPDRVSNVTVSHDVLPNIKAIKNSTTAGLMQSDSYGGGTANMEFQTLTSL
PFYNFSSSVSVLYSEVFPKMAKPHTISEFYQGKNRIAMHPASANNFNRKT
VYSNLGFSKFLALSGSKDKFKNIENVGLLTSDKTVYNNILSLINPSESQF
FSVITMQNHIPWSSDYPEEIVAEGKNFTEEENHNLTSYARLLSFTDKETR
AFLEKLTQINKPITVVFYGDHLPGLYPDSAFNKHIENKYLTDYFIWSNGT
NEKKNHPLINSSDFTAALFEHTDSKVSPYYALLTEVLNKASVDKSPDSPE
VKAIQNDLKNIQYDVTIGKGYLLKHKTFFKI

Ligand information

Ligand ID

InChI

InChI=1S/Mn/q+2

InChIKey

WAEMQWOKJMHJLA-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mn+2]
CACTVS 3.341	[Mn++]

Formula

Name

MANGANESE (II) ION

PDB chain

6dgm Chain A Residue 901 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	6dgm Discovery of glycerol phosphate modification on streptococcal rhamnose polysaccharides.
Resolution	1.49 Å
Binding residue (original residue number in PDB)	E488 T530 D711 H712
Binding residue (residue number reindexed from 1)	E47 T89 D270 H271
Annotation score	4

Enzymatic activity

Enzyme Commision number

External links

PDB	RCSB:6dgm, PDBe:6dgm, PDBj:6dgm
PDBsum	6dgm
PubMed	30936502
UniProt	Q48UA4

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