Structure of PDB 6db2 Chain A Binding Site BS01

Receptor Information
>6db2 Chain A (length=336) Species: 1960 (Streptomyces vinaceus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PWSEFRLTPAEAAAAAALAARCAQRYDETDGPEFLLDAPVIAHELPRRLR
TFMARARLDAWPHALVVRGNPVDDAALGSTPVHWRTARTPGSRPLSFLLM
LYAGLLGDVFGWATQQDGRVVTDVLPIKGGEHTLVSSSSRQELGWHTEDA
FSPYRADYVGLLSLRNPDGVATTLAGVPLDDLDERTLDVLFQERFLIRPD
DSHLQVNNSTAQQGRVEFEGIAQAADRPEPVAILTGHRAAPHLRVDGDFS
APAEGDEEAAAALGTLRKLIDASLYELVLDQGDVAFIDNRRAVHGRRAFQ
PRYDGRDRWLKRINITRDLHRSRKAWAGDSRVLGQR
Ligand information
Ligand IDHRG
InChIInChI=1S/C7H16N4O2/c8-5(6(12)13)3-1-2-4-11-7(9)10/h5H,1-4,8H2,(H,12,13)(H4,9,10,11)/t5-/m0/s1
InChIKeyQUOGESRFPZDMMT-YFKPBYRVSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C(CCNC(=N)N)CC(C(=O)O)N
OpenEye OEToolkits 1.5.0C(CCNC(=N)N)C[C@@H](C(=O)O)N
CACTVS 3.341N[CH](CCCCNC(N)=N)C(O)=O
ACDLabs 10.04O=C(O)C(N)CCCCNC(=[N@H])N
CACTVS 3.341N[C@@H](CCCCNC(N)=N)C(O)=O
FormulaC7 H16 N4 O2
NameL-HOMOARGININE
ChEMBLCHEMBL589752
DrugBankDB03974
ZINCZINC000001529320
PDB chain6db2 Chain A Residue 402 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6db2 Two Distinct Mechanisms for C-C Desaturation by Iron(II)- and 2-(Oxo)glutarate-Dependent Oxygenases: Importance of alpha-Heteroatom Assistance.
Resolution1.7 Å
Binding residue
(original residue number in PDB)		Q137 L156 V157 S158 H168 D222 S224 D268 D270 R334
Binding residue
(residue number reindexed from 1)		Q115 L134 V135 S136 H146 D200 S202 D246 D248 R312
Annotation score2
Enzymatic activity
Enzyme Commision number 1.14.11.41: L-arginine hydroxylase.
Gene Ontology
Molecular Function
GO:0005506 iron ion binding
GO:0016491 oxidoreductase activity
GO:0016706 2-oxoglutarate-dependent dioxygenase activity
GO:0046872 metal ion binding
GO:0102525 2-oxoglutarate, L-arginine oxygenase (succinate-forming) activity
Biological Process
GO:0017000 antibiotic biosynthetic process
Cellular Component
GO:0016020 membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6db2, PDBe:6db2, PDBj:6db2
PDBsum6db2
PubMed29708749
UniProtQ6WZB0|ARGHX_STRVI Alpha-ketoglutarate-dependent L-arginine hydroxylase (Gene Name=vioC)

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