Structure of PDB 6d2y Chain A Binding Site BS01

Receptor Information
>6d2y Chain A (length=428) Species: 752555 (Segatella baroniae B14) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LASGTPTVYYIRPVDVASKDSLLTSASLQSTICLVGDNLKSIKGILFNDQ
AAVLNTSYITDHTLIVSVPNEIPSVVTDKMYMITASNDTIPYDFQVTISA
PSVVSMSNEWAKAGEEVTITGDYFLDYDNYPLEIKVGKDYTLPREAITSI
EKTKITFTMPEDMPQHEDIVVSDKYGSTNAPFQYMDNRGMLFDFDTPNSV
TNEVLGNSGWHDRIIQSDDTSLSGNYMQIGNTGVTMAANGKWNDEFSFEY
WAGNWANPETYASHPRLCDVADFSDWTNKSLKFEMLIPADAGWGAGPMQI
IFGSPSQISLGNAGVVDVNGVTLAGCNNTWFHAQNGWGRAIYMPWYSNSS
ASLYDTGDKWVTVTIPLSDFNLEFDGNSATKSFSSINDFSSLNIFLIKGA
YNDKSVLPDGVECTPIIKIDNIRVVPNK
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain6d2y Chain A Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6d2y Crystal structure of surface glycan-binding protein PbSGBP-B from Prevotella bryantii
Resolution2.19 Å
Binding residue
(original residue number in PDB)		D225 D227 S255 N257 D452
Binding residue
(residue number reindexed from 1)		D193 D195 S223 N225 D420
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0030247 polysaccharide binding

View graph for
Molecular Function
External links
PDB RCSB:6d2y, PDBe:6d2y, PDBj:6d2y
PDBsum6d2y
PubMed
UniProtD8DY16

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