Structure of PDB 6cw4 Chain A Binding Site BS01

Receptor Information

>6cw4 Chain A (length=87) Species: 11888 (Rous sarcoma virus - Prague C)

SEAVIKVISSACKTYCGKTSPSKKEIGAMLSLLQKEGLLMSPSDLYSPGS
WDPITAALSQRAMILGKSGELKTWGLVLGALKAAREE

Ligand information

• Ligand ID: FGV
• InChI: InChI=1S/C6H15O15P3/c7-1-4(19-22(10,11)12)2(8)6(21-24(16,17)18)3(9)5(1)20-23(13,14)15/h1-9H,(H2,10,11,12)(H2,13,14,15)(H2,16,17,18)/t1-,2-,3-,4-,5+,6-
• InChIKey: RURWIJNHQMXJDV-GBKPYZKPSA-N
• SMILES:
  CACTVS 3.385: O[C@@H]1[C@H](O[P](O)(O)=O)[C@@H](O)[C@H](O[P](O)(O)=O)[C@@H](O)[C@@H]1O[P](O)(O)=O
  CACTVS 3.385: O[CH]1[CH](O[P](O)(O)=O)[CH](O)[CH](O[P](O)(O)=O)[CH](O)[CH]1O[P](O)(O)=O
  OpenEye OEToolkits 2.0.6: C1(C(C(C(C(C1OP(=O)(O)O)O)OP(=O)(O)O)O)OP(=O)(O)O)O
  ACDLabs 12.01: C1(C(O)C(OP(O)(O)=O)C(O)C(C1O)OP(=O)(O)O)OP(O)(O)=O
• Formula: C6 H15 O15 P3
• Name: (1R,2S,3r,4R,5S,6s)-2,4,6-trihydroxycyclohexane-1,3,5-triyl tris[dihydrogen (phosphate)];
  D-myo-inositol-1,3,5-trisphosphate
• ChEMBL: CHEMBL3349692
• ZINC: ZINC000100590871
• PDB chain: 6cw4 Chain A Residue 101

Receptor-Ligand Complex Structure

Structure summary

• PDB: 6cw4 Structural basis for targeting avian sarcoma virus Gag polyprotein to the plasma membrane for virus assembly.
• Resolution: N/A
• Binding residue (original residue number in PDB): K6 K13 K23 K24
• Binding residue (residue number reindexed from 1): K6 K13 K23 K24
• Annotation score: 2
• Binding affinity: PDBbind-CN: -logKd/Ki=2.82,Kd=1.50mM

Enzymatic activity

• Enzyme Commision number: 2.7.7.-
  2.7.7.49: RNA-directed DNA polymerase.
  2.7.7.7: DNA-directed DNA polymerase.
  3.1.-.-
  3.1.26.4: ribonuclease H.
  3.4.23.-

External links

• PDB: RCSB:6cw4, PDBe:6cw4, PDBj:6cw4
• PDBsum: 6cw4
• PubMed: 30309983
• UniProt: P03354|POL_RSVP Gag-Pol polyprotein (Gene Name=gag-pol)