Structure of PDB 6c4c Chain A Binding Site BS01

Receptor Information
>6c4c Chain A (length=428) Species: 652616 (Mycobacterium tuberculosis str. Erdman = ATCC 35801) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
HMSVVGTPKSAEQIQQEWDTNPRWKDVTRTYSAEDVVALQGSVVEEHTLA
RRGAEVLWEQLHDLEWVNALGALTGNMAVQQVRAGLKAIYLSGWQVAGDA
NLSGHTYPDQSLYPANSVPQVVRRINNALQRADQIAKIEGDTSVENWLAP
IVADGEAGFGGALNVYELQKALIAAGVAGSHWEDQLASEKKCGHLGGKVL
IPTQQHIRTLTSARLAADVADVPTVVIARTDAEAATLITSDVDERDQPFI
TGERTREGFYRTKNGIEPCIARAKAYAPFADLIWMETGTPDLEAARQFSE
AVKAEYPDQMLAYNCSPSFNWKKHLDDATIAKFQKELAAMGFKFQFITLA
GFHALNYSMFDLAYGYAQNQMSAYVELQEREFAAEERGYTATKHQREVGA
GYFDRIATTVDPNSSTTALTGSTEEGQF
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain6c4c Chain A Residue 503 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6c4c The Nitro Group as a Masked Electrophile in Covalent Enzyme Inhibition.
Resolution2.2 Å
Binding residue
(original residue number in PDB)		A276 A279 Q308
Binding residue
(residue number reindexed from 1)		A277 A280 Q309
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) Y89 D108 D153 E155 H180 E182 C191 H193 R228 E285 Q308 S315 S317
Catalytic site (residue number reindexed from 1) Y90 D109 D154 E156 H181 E183 C192 H194 R229 E286 Q309 S316 S318
Enzyme Commision number 4.1.3.1: isocitrate lyase.
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0004451 isocitrate lyase activity
GO:0016829 lyase activity
GO:0035375 zymogen binding
GO:0046421 methylisocitrate lyase activity
GO:0046872 metal ion binding
Biological Process
GO:0006097 glyoxylate cycle
GO:0006099 tricarboxylic acid cycle
GO:0006102 isocitrate metabolic process
GO:0019752 carboxylic acid metabolic process
GO:0052572 response to host immune response
GO:0071456 cellular response to hypoxia
Cellular Component
GO:0005576 extracellular region
GO:0005829 cytosol
GO:0005886 plasma membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6c4c, PDBe:6c4c, PDBj:6c4c
PDBsum6c4c
PubMed29782144
UniProtP9WKK7|ACEA_MYCTU Isocitrate lyase (Gene Name=icl)

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