Structure of PDB 6byg Chain A Binding Site BS01

Receptor Information

>6byg Chain A (length=856) Species: 190486 (Xanthomonas citri pv. citri str. 306)

SHMTAVTLDGGWRVRLVPGQEQGKTYPKAAAWLPAQVPGAVQTDLIAAKI
VPDPFYRDNEGKIQWAGLSDWQYQTRFTVDAATLKREHVELVFDGLDTFA
EVTLNGKQLLSADNMFRQWRVDAKSLLKRGDNLLEVKLYSPIKKIQPWLA
KQPYALPGAYDSAFGDEPEARHSSTYVRKAPYNFGWDWGPRMVNAGIWKD
VRVEAWDAVRVDGLHIAQQRVDAHSAQVQAQLDLQAGRSGPVQVTLDVLG
PDGQKVGQFTQDAVVDPGQNRVDLAVRIANPKRWFPAGYGAQDRYTFVAS
VRDADGDSQQIKRVTGLRSVELRREKDRFGKSMEIVINGIPIFAKGANLI
PLDAFPARVTHERMRSTLQDARDANMNMLRMWGGGHYQDDYFYDVADELG
IMIWQDFMFGGAVPPYDVEFRENTRQEAIEQVKRLRDHPSLVLWCGNNEV
QTGWENWGDRVKFKQSVDPEERTRIERGMTTLFGTVFREVVATYDSDVPY
WATSPGTDFDGAADQTNDGDMHYWKVWGGPALPVTEYLNVTPRFMSAYGL
QSFPDMRTVRAFAEPGDMDPESPVMRVHQKFDKGNGNKRLMLYIRREFGE
PKDFESFVYLSQLMQAEGINIAASHLRASRPQSMGSLYWQLNDVWPGASW
SSVDYYGRWKALHYHARRFYAPEMIAALRNDKGQTEVSLVSDRTTPLTAR
WRMRVMGMDGKVLSKREEKASVNALSSQHVGNFSDKQLLGSADPKRTYAV
FELLDGDTLLSREVVFFAPAKQLALPAAKIDSQWRADGDGYALTLTSDTL
AREVWLSFGDVDATLSDNAFDLLPGEPLTVRVTSKAALAQLQSALQVRDL
AATLAG

Ligand information

• Ligand ID: BMA
• InChI: InChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5+,6-/m1/s1
• InChIKey: WQZGKKKJIJFFOK-RWOPYEJCSA-N
• SMILES:
  CACTVS 3.341: OC[C@H]1O[C@@H](O)[C@@H](O)[C@@H](O)[C@@H]1O
  OpenEye OEToolkits 1.5.0: C(C1C(C(C(C(O1)O)O)O)O)O
  CACTVS 3.341: OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
  OpenEye OEToolkits 1.5.0: C([C@@H]1[C@H]([C@@H]([C@@H]([C@@H](O1)O)O)O)O)O
  ACDLabs 10.04: OC1C(O)C(OC(O)C1O)CO
• Formula: C6 H12 O6
• Name: beta-D-mannopyranose;
  beta-D-mannose;
  D-mannose;
  mannose
• ZINC: ZINC000003830679
• PDB chain: 6byg Chain A Residue 901

Receptor-Ligand Complex Structure

Structure summary

• PDB: 6byg Structural basis of exo-beta-mannanase activity in the GH2 family.
• Resolution: 1.999 Å
• Binding residue (original residue number in PDB): W214 D215 W216 W410 E477 W552 W667 W678
• Binding residue (residue number reindexed from 1): W186 D187 W188 W382 E449 W524 W639 W650
• Annotation score: 4

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Fri Nov 29 00:07:54 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6byg', asym_id = 'A', bs = 'BS01', title = 'Structural basis of exo-beta-mannanase activity in the GH2 family.'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6byg', asym_id='A', bs='BS01', title='Structural basis of exo-beta-mannanase activity in the GH2 family.')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0004553,0005975', uniprot = '', pdbid = '6byg', asym_id = 'A'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0004553,0005975', uniprot='', pdbid='6byg', asym_id='A')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>