Structure of PDB 6bo1 Chain A Binding Site BS01

Receptor Information
>6bo1 Chain A (length=129) Species: 9031 (Gallus gallus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGS
TDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVS
DGNGMNAWVAWRNRCKGTDVQAWIRGCRL
Ligand information
Ligand IDE3D
InChIInChI=1S/C9H10N2.2ClH.Ru/c1-10-7-11(2)9-6-4-3-5-8(9)10;;;/h3-6H,1-2H3;2*1H;/q+1;;;+2/p-2
InChIKeyAATWLMBEQHDZRT-UHFFFAOYSA-L
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.6Cn1c2ccccc2[n+](c1[Ru](Cl)Cl)C
CACTVS 3.385Cn1c2ccccc2[n+](C)c1[Ru](Cl)Cl
ACDLabs 12.01c1([Ru](Cl)Cl)n(C)c2c([n+]1C)cccc2
FormulaC9 H10 Cl2 N2 Ru
Namedichloro(1,3-dimethyl-1H-benzimidazol-3-ium-2-yl)ruthenium;
dichlorido(1,3-dimethylbenzimidazol-2-ylidene)ruthenium(II)
ChEMBL
DrugBank
ZINC
PDB chain6bo1 Chain A Residue 202 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6bo1 Unexpected arene ligand exchange results in the oxidation of an organoruthenium anticancer agent: the first X-ray structure of a protein-Ru(carbene) adduct.
Resolution1.24 Å
Binding residue
(original residue number in PDB)		A11 R14 H15 D87 I88
Binding residue
(residue number reindexed from 1)		A11 R14 H15 D87 I88
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) E35 N46 D48 S50 D52 N59
Catalytic site (residue number reindexed from 1) E35 N46 D48 S50 D52 N59
Enzyme Commision number 3.2.1.17: lysozyme.
Gene Ontology
Molecular Function
GO:0003796 lysozyme activity
GO:0005515 protein binding
GO:0016231 beta-N-acetylglucosaminidase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0042802 identical protein binding
Biological Process
GO:0016998 cell wall macromolecule catabolic process
GO:0031640 killing of cells of another organism
GO:0042742 defense response to bacterium
GO:0050829 defense response to Gram-negative bacterium
GO:0050830 defense response to Gram-positive bacterium
Cellular Component
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0005737 cytoplasm
GO:0005783 endoplasmic reticulum

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6bo1, PDBe:6bo1, PDBj:6bo1
PDBsum6bo1
PubMed29713703
UniProtP00698|LYSC_CHICK Lysozyme C (Gene Name=LYZ)

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