Structure of PDB 6blj Chain A Binding Site BS01

Receptor Information
>6blj Chain A (length=473) Species: 5763 (Naegleria fowleri) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
HHHMLDINLFREYKGGNPEIIRESQRRRFADVTLVDKVIELDEVWRATIG
KLNHIKSFTGIISKEVGNRMKNKVPLGDDLELPKEVTDDVYALFTKEALE
QGSLAKLNTNQLKKLSTYITEVHIKNSEEEVKQKEKERDDVLLQIGNIVH
ETVVVSDNEDNNGIVRMVGNPRPKVDPETGYKCLKHIDIMRKLGGLATEE
GTQVGGGRGYFLLGDLVRMNLALQNYAIDFLAKKGYMPIYTPFFMTKEQM
KKVAQLSQFDEELYTVTGEGEDKYLIATSEQPIAAFHLEKRFDESELPIK
YCGMSTCFRKEVGAHGKDTLGIFRVHQFEKIEQFVVTSPKDNKSWEMFDE
MIGNSEAFYQSLGIPYRVVNIVSGALNNAAAKKFDLEAWFPGADEGNEYR
ELVSCSNCTDYQTRRLEVKYGEVEFCHMLNSTLTATSRTLCCIVENYQTP
EGVNVPEVLQPYMGGTKFIKFKN
Ligand information
Ligand IDAMP
InChIInChI=1S/C10H14N5O7P/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(22-10)1-21-23(18,19)20/h2-4,6-7,10,16-17H,1H2,(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
InChIKeyUDMBCSSLTHHNCD-KQYNXXCUSA-N
SMILES
SoftwareSMILES
CACTVS 3.370Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O
CACTVS 3.370Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O
OpenEye OEToolkits 1.7.6c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)N
ACDLabs 12.01O=P(O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
OpenEye OEToolkits 1.7.6c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)O)O)O)N
FormulaC10 H14 N5 O7 P
NameADENOSINE MONOPHOSPHATE
ChEMBLCHEMBL752
DrugBankDB00131
ZINCZINC000003860156
PDB chain6blj Chain A Residue 500 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6blj Crystal structure of cytoplasmic Serine-tRNA ligase from Neisseria fowlerii in complex with AMP
Resolution2.1 Å
Binding residue
(original residue number in PDB)		R306 E308 R321 V322 F325 L399 S401 A439 R442
Binding residue
(residue number reindexed from 1)		R309 E311 R324 V325 F328 L402 S404 A435 R438
Annotation score5
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Wed Dec 18 17:30:48 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6blj', asym_id = 'A', bs = 'BS01', title = 'Crystal structure of cytoplasmic Serine-tRNA ligase from Neisseria fowlerii in complex with AMP'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6blj', asym_id='A', bs='BS01', title='Crystal structure of cytoplasmic Serine-tRNA ligase from Neisseria fowlerii in complex with AMP')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0000166,0004812,0004828,0005524,0006418,0006434', uniprot = '', pdbid = '6blj', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0000166,0004812,0004828,0005524,0006418,0006434', uniprot='', pdbid='6blj', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>