Structure of PDB 6bge Chain A Binding Site BS01

Receptor Information

>6bge Chain A (length=323) Species: 210 (Helicobacter pylori) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

LSAEDKKFLEVERALKEAALNPLRHATEELFGDFLKMENITEICYNGNKV
VWVLKNNGEWQPFDVRDRKAFSLSRLMHFARCCASFKKKTIDNYENPILS
SNLANGERVQIVLSPVTVNDETISISIRIPSKTTYPHSFFEEQGFYNLLD
NKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIE
DTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRSSEAY
DFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNSAARNIKFESLIEG
FKDLIDMIVHINHHKQCDEFYIK

Ligand information

Ligand ID

DN7

InChI

InChI=1S/C12H9NO3/c14-12(15)9-4-6-10(7-5-9)16-11-3-1-2-8-13-11/h1-8H,(H,14,15)

InChIKey

GKSKQZLHPWBLJL-UHFFFAOYSA-N

SMILES

Software	SMILES
OpenEye OEToolkits 2.0.6	c1ccnc(c1)Oc2ccc(cc2)C(=O)O
CACTVS 3.385	OC(=O)c1ccc(Oc2ccccn2)cc1
ACDLabs 12.01	c1cc(ccc1C(O)=O)Oc2ccccn2

Formula

C12 H9 N O3

Name

4-[(pyridin-2-yl)oxy]benzoic acid

PDB chain

6bge Chain B Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	6bge CagAlpha in complex with hexamer inhibitor
Resolution	2.9 Å
Binding residue (original residue number in PDB)	D38 M42 F68 D69 R73
Binding residue (residue number reindexed from 1)	D33 M37 F63 D64 R68
Annotation score	1

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0005515	protein binding
GO:0016887	ATP hydrolysis activity

	Biological Process
GO:0044097	secretion by the type IV secretion system

	Cellular Component
GO:0043684	type IV secretion system complex

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Molecular Function

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Cellular Component

External links

PDB	RCSB:6bge, PDBe:6bge, PDBj:6bge
PDBsum	6bge
PubMed
UniProt	Q6VRM0

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