Structure of PDB 6amp Chain A Binding Site BS01

Receptor Information
>6amp Chain A (length=304) Species: 10116 (Rattus norvegicus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ECLIGPVTPLDASDFALDIRMPGVTPKESDTYFCMSMRLPVDEEAFVIDF
KPRASMDTVHHMLLFGCNMPSSTGSYWFCDEGTCTDKANILYAWARNAPP
TRLPKGVGFRVGGETGSKYFVLQVAYGDISAFRDNHKDCSGVSVHLTRVP
QPLIAGMYLMMSVDTVIPPGEKVVNADISCQYKMYPMHVFAYRVHTHHLG
KVVSGYRVRNGQWTLIGRQNPQLPQAFYPVEHPVDVTFGDILAARCVFTG
EGRTEATHISDEMCNLYIMYYMEAKYALSFMTCTKNVAPDMFRTIPAEAN
IPIP
Ligand information
Ligand IDCU
InChIInChI=1S/Cu/q+2
InChIKeyJPVYNHNXODAKFH-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Cu+2]
CACTVS 3.341[Cu++]
FormulaCu
NameCOPPER (II) ION
ChEMBL
DrugBankDB14552
ZINC
PDB chain6amp Chain A Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6amp Effects of copper occupancy on the conformational landscape of peptidylglycine alpha-hydroxylating monooxygenase.
Resolution2.48 Å
Binding residue
(original residue number in PDB)		H242 H244 M314
Binding residue
(residue number reindexed from 1)		H195 H197 M263
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) H107 H108 Q170 A172 H242 H244 M314
Catalytic site (residue number reindexed from 1) H60 H61 Q123 A125 H195 H197 M263
Enzyme Commision number 1.14.17.3: peptidylglycine monooxygenase.
4.3.2.5: peptidylamidoglycolate lyase.
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0004497 monooxygenase activity
GO:0005507 copper ion binding
GO:0016715 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen
Biological Process
GO:0006518 peptide metabolic process
Cellular Component
GO:0016020 membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6amp, PDBe:6amp, PDBj:6amp
PDBsum6amp
PubMed30271955
UniProtP14925|AMD_RAT Peptidylglycine alpha-amidating monooxygenase (Gene Name=Pam)

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