Structure of PDB 6a9v Chain A Binding Site BS01

Receptor Information
>6a9v Chain A (length=393) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GELTPGISALEYYERRIRLAETLPPKSCVILAGNDIFQQENDLFYLSGWN
EPNSVMILEKPTDSLSDTIFHMLVPPGVQEIFNADESASINDLSKYLPKI
INRNDFIYFDMLSSSNFKHIKSLLTIKPISKRIAEFRKIKSPQELRIMRR
AGQISGRSFNQAFAKRFRNERTLDSFLHYKFISGGCDKDAYIPVVATGSN
SLCIHYTRNDDVMFDDEMVLVDAAGSLGGYCADISRTWPNSGKFTDAQRD
LYEAVLNVQRDCIKLCKASNNYSLHDIHEKSITLMKQELKNLGIDKVSGW
NVEKLYPHYIGHNLGLDVHDVPKVSRYEPLKVGQVITIEPGLYIPNEESF
PSYFRNVGIRIEDDIAIGEDTYTNLTVEAVKEIDDLENVMQNG
Ligand information
Ligand IDMN
InChIInChI=1S/Mn/q+2
InChIKeyWAEMQWOKJMHJLA-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0
[Mn+2]
CACTVS 3.341[Mn++]
FormulaMn
NameMANGANESE (II) ION
ChEMBL
DrugBankDB06757
ZINC
PDB chain6a9v Chain A Residue 601 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6a9v Crystal structures and biochemical analyses of intermediate cleavage peptidase: role of dynamics in enzymatic function.
Resolution2.9 Å
Binding residue
(original residue number in PDB)
Y296 D327 D338 E467
Binding residue
(residue number reindexed from 1)
Y191 D222 D233 E362
Annotation score4
Enzymatic activity
Enzyme Commision number 3.4.11.26: intermediate cleaving peptidase 55.
Gene Ontology
Molecular Function
GO:0004177 aminopeptidase activity
GO:0008237 metallopeptidase activity
GO:0030145 manganese ion binding
GO:0046872 metal ion binding
GO:0070006 metalloaminopeptidase activity
Biological Process
GO:0006508 proteolysis
GO:0016485 protein processing
GO:0050821 protein stabilization
Cellular Component
GO:0005634 nucleus
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:6a9v, PDBe:6a9v, PDBj:6a9v
PDBsum6a9v
PubMed30582634
UniProtP40051|ICP55_YEAST Intermediate cleaving peptidase 55 (Gene Name=ICP55)

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