Structure of PDB 5zmm Chain A Binding Site BS01

Receptor Information
>5zmm Chain A (length=530) Species: 100226 (Streptomyces coelicolor A3(2)) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EITRAGILQAIAEHDRIGPEAFRATYGFHAATSYFLEHEGRLYDSKAIAG
VAHMYVAWLRREGFTIREAPKTFHRRVGDVRPAALHRPVLLLWAIGQAVA
RAPRLQPWSTTRDAVAPLMEKYGQVEDGVDGVRYPFWALVRDDLWCVEQA
EELTLTSRGRRPTLESLNAVDPSAGLREDDYNLLRSQPEAAASAAAGLIA
RYFHLLPAGLLEDFGLHELLAGRWPDALRPLLGETFKDRDAIWRAYGGQK
MAGIGCLADGILSAFSDDKGPYADGRIPDTTWIAYVGDGLSGDQKLTDGN
ELMAEHQAVGRALRYWHKPFQGQWSFETWAVIVQRRLRWGLGEDKLPRRE
FLWVLAPVPSPERETWPPEVLEALEADTGELHDDTGDYRPSDLALTPGAP
DGTESDDEAYRRLAQKAEANAERRGQLKKPTVADKYVRDPSARGAVLKRC
QKRCENPECAGHPTELTKAGLPILQVDHVNDLAKGGPDVPWNMIALCPNC
HALKTYGANKVRLQRLLAATARRLHEEKLQ
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain5zmm Chain A Residue 601 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5zmm Structural basis for the recognition of sulfur in phosphorothioated DNA.
Resolution3.15 Å
Binding residue
(original residue number in PDB)		C484 C489 C527 C530
Binding residue
(residue number reindexed from 1)		C454 C459 C497 C500
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0004519 endonuclease activity
GO:0008270 zinc ion binding
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:5zmm, PDBe:5zmm, PDBj:5zmm
PDBsum5zmm
PubMed30409991
UniProtQ9L0M9

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