Structure of PDB 5z06 Chain A Binding Site BS01

Receptor Information

>5z06 Chain A (length=697) Species: 435591 (Parabacteroides distasonis ATCC 8503)

KPYDYVFFENSLMKGDYFYSQAKYTSPSWIKNARHHLPVAGSVAFTPGNS
LELTYVSAPGGDWYSEIQYCPVRGNDFFREPSTLSMQVRLRESMNAAALP
NIAIRYADSTYTQYLNLRNYLKDTRPGVWHPVSIPLEDFGLNAVNDTNIK
KLAAVALRPGTADGNEYTIYLDDIELLPASLPSVSALNAPVLQEAKAYER
HIDIKWIPEDIKYYRIYRSFDGITYQPVAVRRPWMNRYTDFLGEVGKKAY
YKVTAVDYALNESNDSQTVSATTYPMTDEQLLDMVQEANFRYYWEGAEPN
SGLARENIPGRNDMIATGASGFGIMAIVAGIERGFITREEGVQRFLKITS
FLEKADKFHGAVSHFIDGTTGKTVAFFGPKDNGGDLVETSFLFQGLLTAR
QYFNQENDKEKQIRKSIDNLWKNVEWSWYKQFKDSPYLYWHWSPDQAWVI
NHKLIGWNETMITYMLAIMGPKYGISPEMYYSGWASQEEYAQEYRADWGR
VEDGKMYTNGNTYYGENLKVGVSNGGPLFFIHYSYLGLDPHKFTDKYTNY
FENNQKMAKINQRYCIENQGGYVGYGEDCWGLTASDFAWNYQAQEPMPHR
DNGTMAPTGALASFPYTPDASMKALRNYYRNHGSFLWGEYGFRDAFNLTV
NWVSPLFMGLNQAPVTVMIENYRTNLLWNLFMSHPDVQKGIQKIQSI

Ligand information

• Ligand ID: CA
• InChI: InChI=1S/Ca/q+2
• InChIKey: BHPQYMZQTOCNFJ-UHFFFAOYSA-N
• SMILES:
  CACTVS 3.341: [Ca++]
  ACDLabs 10.04
  OpenEye OEToolkits 1.5.0: [Ca+2]
• Formula: Ca
• Name: CALCIUM ION
• DrugBank: DB14577
• PDB chain: 5z06 Chain A Residue 801

Receptor-Ligand Complex Structure

Structure summary

• PDB: 5z06 Characterization and Structural Analysis of a Novel exo-Type Enzyme Acting on beta-1,2-Glucooligosaccharides from Parabacteroides distasonis
• Resolution: 2.1 Å
• Binding residue (original residue number in PDB): E29 N30 T66 N69 D192
• Binding residue (residue number reindexed from 1): E9 N10 T46 N49 D172
• Annotation score: 1

Enzymatic activity

• Enzyme Commision number: 3.2.1.214: exo beta-1,2-glucooligosaccharide sophorohydrolase (non-reducing end).

Gene Ontology

Molecular Function

• GO:0016798 hydrolase activity, acting on glycosyl bonds

Cellular Component

• GO:0042597 periplasmic space

External links

• PDB: RCSB:5z06, PDBe:5z06, PDBj:5z06
• PDBsum: 5z06
• PubMed: 29763309
• UniProt: A6LGF6|SOPH_PARD8 Exo beta-1,2-glucooligosaccharide sophorohydrolase (non-reducing end) (Gene Name=BDI_3064)