Structure of PDB 5yvr Chain A Binding Site BS01

Receptor Information

>5yvr Chain A (length=403) Species: 1698264 (candidate division MSBL1 archaeon SCGC-AAA259E19) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

HMRMEFRHNLPSSDIIFGSGTLEKIGEETKKWGDKAILVTGKSNMKKLGF
LADAIDYLESAGVETVHYGEIEPNPTTTVVDEGAEIVLEEGCDVVVALGG
GSSMDAAKGIAMVAGHSAEERDISVWDFAPEGDKETKPITEKTLPVIAAT
STSGTGSHVTPYAVITNPETKGKPGFGNKHSFPKVSIVDIDILKEMPPRL
TAITGYDVFSHVSENLTAKGDHPTADPLAIRAIEYVTEYLLRAVEDGEDI
KAREKMAVADTYAGLSNTISGTTLRHAMAAPISGYYPDISHGQALASISV
PIMEHNIENGDEKTWERYSRIAVALDASKPVDNTRQAASKAVDGLKNLLR
SLDLDKPLSELGVEEEKIPEMTEGAFIYMGGGIEANPVDVSKEDVKEIFR
KSL

Ligand information

Ligand ID

InChI

InChI=1S/Mn/q+2

InChIKey

WAEMQWOKJMHJLA-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mn+2]
CACTVS 3.341	[Mn++]

Formula

Name

MANGANESE (II) ION

PDB chain

5yvr Chain A Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	5yvr Identification and Experimental Characterization of an Extremophilic Brine Pool Alcohol Dehydrogenase from Single Amplified Genomes
Resolution	1.896 Å
Binding residue (original residue number in PDB)	D204 H208 H273 H288
Binding residue (residue number reindexed from 1)	D207 H211 H276 H291
Annotation score	1

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0000166	nucleotide binding
GO:0004022	alcohol dehydrogenase (NAD+) activity
GO:0016491	oxidoreductase activity
GO:0046872	metal ion binding

View graph for
Molecular Function

External links

PDB	RCSB:5yvr, PDBe:5yvr, PDBj:5yvr
PDBsum	5yvr
PubMed	29188989
UniProt	A0A133UP32

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