Structure of PDB 5yts Chain A Binding Site BS01

Receptor Information
>5yts Chain A (length=74) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKKYLRSVGD
GETVEFDVVEGEKGAEAANVTGPG
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5yts Crystal structure of a Y-box binding protein 1 (YB-1)-RNA complex reveals key features and residues interacting with RNA.
Resolution1.77 Å
Binding residue
(original residue number in PDB)		K64 W65 N67 N70 Y72 F74 D83 F85 H87 K118
Binding residue
(residue number reindexed from 1)		K13 W14 N16 N19 Y21 F23 D32 F34 H36 K63
Binding affinityPDBbind-CN: Kd=2.77uM
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding

View graph for
Molecular Function
External links
PDB RCSB:5yts, PDBe:5yts, PDBj:5yts
PDBsum5yts
PubMed31160337
UniProtP67809|YBOX1_HUMAN Y-box-binding protein 1 (Gene Name=YBX1)

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