Structure of PDB 5yrf Chain A Binding Site BS01

Receptor Information
>5yrf Chain A (length=142) Species: 113549 (Pteria penguin) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EIASEYLGGPGGDAFDDKAVAQNGDITRIEMQCTDVATYIKLRYGKVDSR
QWGWGNENCIQWSKKGEKVVHELSSGEYITSAIVTYGKYVQSITFKTNKR
TLPRCGTSATEKSVTVLIPGGLKYISGRWGCRIDGLRFHAKC
Ligand information
Ligand IDGLC
InChIInChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5-,6+/m1/s1
InChIKeyWQZGKKKJIJFFOK-DVKNGEFBSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C(C1C(C(C(C(O1)O)O)O)O)O
OpenEye OEToolkits 1.5.0C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)O)O)O)O
CACTVS 3.341OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
CACTVS 3.341OC[C@H]1O[C@H](O)[C@H](O)[C@@H](O)[C@@H]1O
ACDLabs 10.04OC1C(O)C(OC(O)C1O)CO
FormulaC6 H12 O6
Namealpha-D-glucopyranose;
alpha-D-glucose;
D-glucose;
glucose
ChEMBLCHEMBL423707
DrugBank
ZINCZINC000003861213
PDB chain5yrf Chain A Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5yrf Structures of jacalin-related lectin PPL3 regulating pearl shell biomineralization
Resolution1.7 Å
Binding residue
(original residue number in PDB)		G30 G31 Y108 G149 C150 R151 D153
Binding residue
(residue number reindexed from 1)		G11 G12 Y89 G130 C131 R132 D134
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0030246 carbohydrate binding

View graph for
Molecular Function
External links
PDB RCSB:5yrf, PDBe:5yrf, PDBj:5yrf
PDBsum5yrf
PubMed29524263
UniProtB6F0T7

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