Structure of PDB 5ymw Chain A Binding Site BS01

Receptor Information
>5ymw Chain A (length=271) Species: 9031 (Gallus gallus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MELHTLRYIQTAMTDPGPGQPWFVTVGYVDGELFVHYNSTARRYVPRTEW
IAAKADQQYWDGQTQIGQGNEQIDRENLGILQRRYNQTGGSHTVQWMYGC
DILEGGPIRGYYQMAYDGRDFTAFDKGTMTFTAAVPEAVPTKRKWEEESE
PERWKNYLEETCVEWLRRYVEYGKAELGRRERPEVRVWGKEADGILTLSC
RAHGFYPRPIVVSWLKDGAVRGQDAHSGGIVPNGDGTYHTWVTIDAQPGD
GDKYQCRVEHASLPQPGLYSW
Ligand information
>5ymw Chain C (length=8) Species: 11888 (Rous sarcoma virus - Prague C) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
LPACVLEV
Receptor-Ligand Complex Structure
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PDB5ymw An Invariant Arginine in Common with MHC Class II Allows Extension at the C-Terminal End of Peptides Bound to Chicken MHC Class I.
Resolution1.997 Å
Binding residue
(original residue number in PDB)		Y7 Q62 I65 N69 I72 N76 W95 Y97 T140 W144 E149 R152 W153 Y156 W164 Y168
Binding residue
(residue number reindexed from 1)		Y8 Q63 I66 N70 I73 N77 W96 Y98 T141 W145 E150 R153 W154 Y157 W165 Y169
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:5ymw, PDBe:5ymw, PDBj:5ymw
PDBsum5ymw
PubMed30341185
UniProtP15979|HA1F_CHICK Class I histocompatibility antigen, F10 alpha chain

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