Structure of PDB 5ylb Chain A Binding Site BS01

Receptor Information

>5ylb Chain A (length=187) Species: 284812 (Schizosaccharomyces pombe 972h-) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

YLDDFENWTVVPVETIEGINYYPNCLPESVQRNLINNVPKELLSIYGSGK
QSHLYIPFPAHINCLNDYIPSDFKQRLWKGQDAEAIIMQVYNPGDGIIPH
KDLEMFGDGVAIFSFLSNTTMIFTHPELKLKSKIRLEKGSLLLMSGTARY
DWFHEIPFRAGDWVMNDGEEKWVSRSQRLSVTMRRII

Ligand information

Ligand ID

InChI

InChI=1S/Fe/q+3

InChIKey

VTLYFUHAOXGGBS-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 CACTVS 3.341 OpenEye OEToolkits 1.5.0	[Fe+3]

Formula

Name

FE (III) ION

PDB chain

5ylb Chain A Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	5ylb Crystal structure of Ofd2 from Schizosaccharomyces pombe at 1.80 A
Resolution	1.79 Å
Binding residue (original residue number in PDB)	H132 D134 H186
Binding residue (residue number reindexed from 1)	H100 D102 H154
Annotation score	4

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Biological Process
GO:0006974	DNA damage response

View graph for
Biological Process

External links

PDB	RCSB:5ylb, PDBe:5ylb, PDBj:5ylb
PDBsum	5ylb
PubMed
UniProt	Q9UT12\|YLW2_SCHPO Uncharacterized protein P8A3.02c (Gene Name=SPAP8A3.02c)

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