Structure of PDB 5yka Chain A Binding Site BS01

Receptor Information
>5yka Chain A (length=297) Species: 481448 (Methylacidiphilum infernorum V4) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QPIIQFDAESWEAEFTQEIQDKAIEGLESGSVLFFPKLNFPLLTEELKFL
DPTWVSGAKNISYDPRSATLKGVEGKSEDLRLLSGLLKRYAEKTAAFLHL
LFPFYGSSLKIARTSFRPVEISGRATSARKDDTRLHVDAFPSSPTGGERI
LRVFSNINPQGKPRSWRIGEPFQNYLNHLLPQLSPPAPGKRFLLYLFGIT
KGYRSLYDHYMLELHDKGKLDLEYQKNSPQVAFDFPAGSTWIVFTDQVLH
AVDKGQFLLEQTFHLKVNALKHPEKSPLKLLETALNKKLVSSESFKL
Ligand information
Ligand IDCO
InChIInChI=1S/Co/q+2
InChIKeyXLJKHNWPARRRJB-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Co+2]
CACTVS 3.341[Co++]
FormulaCo
NameCOBALT (II) ION
ChEMBL
DrugBankDB14205
ZINC
PDB chain5yka Chain A Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5yka Biochemical and Structural Insights into an Fe(II)/ alpha-Ketoglutarate/O2-Dependent Dioxygenase, Kdo 3-Hydroxylase (KdoO).
Resolution1.448 Å
Binding residue
(original residue number in PDB)		H146 D148 H260
Binding residue
(residue number reindexed from 1)		H136 D138 H250
Annotation score3
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:5yka, PDBe:5yka, PDBj:5yka
PDBsum5yka
PubMed30092253
UniProtB3DUR4

[Back to BioLiP]