Structure of PDB 5y4k Chain A Binding Site BS01

Receptor Information
>5y4k Chain A (length=380) Species: 1217651 (Acinetobacter bereziniae NIPH 3) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AQFQCQDDVKPTSYTTEEQKLVDQFWNESLIYLDQYLKALETPTGQCKDS
AQATIQTYNSETGKMQTQCIMKYRDVELVAKHLKAVLAEPDKAKACFDPQ
KNYKAFPLYTPSAHVQNLSATSKWINRPLLTDYYKKIGGEIGAAGLELNE
NFLEITSRTDTTLHWTKDVSIKGLPTLWSSVGWIPFYAENPNAGSDRFRG
GYLYAEVMGPWGNLRIKEIDGEKVGAEIGMTAQLFNTSAPYHYHHPQEIY
MTLTKPQCIDQNKHMVMHWDNNQFKQKRSDNGWTVNIDGSKGKWKKWFSN
QDPEQNWLTYFERNAIHAFHTLEGCNQTIKNSGLVTVWARTTAQDNNQTT
QLCRPMTGAKDIKTMKPEDKAICDLDDWKP
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain5y4k Chain A Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5y4k Mechanistic Insights into Dimethylsulfoniopropionate Lyase DddY, a New Member of the Cupin Superfamily.
Resolution2.0 Å
Binding residue
(original residue number in PDB)		H265 E269 H338
Binding residue
(residue number reindexed from 1)		H244 E248 H317
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0047869 dimethylpropiothetin dethiomethylase activity

View graph for
Molecular Function
External links
PDB RCSB:5y4k, PDBe:5y4k, PDBj:5y4k
PDBsum5y4k
PubMed29106934
UniProtN8X9V6

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