Structure of PDB 5y2w Chain A Binding Site BS01

Receptor Information
>5y2w Chain A (length=208) Species: 1111708 (Synechocystis sp. PCC 6803 substr. Kazusa) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QGRLRLAVITTAKYFIPRLLGEFIQKYPGIEVSLKVTNHEQIRHRMQNNE
DDLYIVSEPPEEIDLNYQPFLDNPLVVIARRDHPLAGKSNIPITALNDEA
FIMREKGSGTRLAVQNLFHRHYVDVRVRLELGSNEAIKQAIAGGMGISVL
SQHTLVSEGARSELTILDIDEFPIKRRWYVANLAGKQLSVITQTFLDYLM
AVTKNMPA
Ligand information
Ligand IDPGA
InChIInChI=1S/C2H5O6P/c3-2(4)1-8-9(5,6)7/h1H2,(H,3,4)(H2,5,6,7)
InChIKeyASCFNMCAHFUBCO-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341OC(=O)CO[P](O)(O)=O
OpenEye OEToolkits 1.5.0C(C(=O)O)OP(=O)(O)O
ACDLabs 10.04O=P(O)(O)OCC(=O)O
FormulaC2 H5 O6 P
Name2-PHOSPHOGLYCOLIC ACID
ChEMBLCHEMBL47181
DrugBankDB02726
ZINCZINC000003869735
PDB chain5y2w Chain A Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5y2w Coordinating carbon and nitrogen metabolic signaling through the cyanobacterial global repressor NdhR.
Resolution2.2 Å
Binding residue
(original residue number in PDB)		I100 T101 T102 N129 H130 N164 R195 S199 G200 T201 R267
Binding residue
(residue number reindexed from 1)		I9 T10 T11 N38 H39 N73 R104 S108 G109 T110 R176
Annotation score1
Binding affinityMOAD: Kd=0.43mM
Enzymatic activity
Enzyme Commision number ?
External links