BioLiP

Receptor Information

>5xqg Chain A (length=896) Species: 5076 (Penicillium chrysogenum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

NCTSSSATVHWLGDKPTYHAGVTFGLPWPQGKYRPQETSFSLTLQSWATG
YWADGSLKWTAHAIAESNQIYDQYTVTASSLGCVKSSSSSSESSAPNSSI
VVTDNSDALTVNTGEVAVSFPKGGNVIIGDIKTKSGKVIGANGRLVLQSQ
DSVPDNFDNRANSPIQYSNFDGNINEVFVNQTSARTLVTVRGNHTVTDGT
DHDPWLPFVVRFYLYANSATIKVMHSIVFDGDENDFITGLGIRFDVPLKG
EEYYDRHIRFAGVDGGIFNEAVQGITGLRRDPGEEIRAAQFAGQKLADTE
TWEPRVSTRLKWIPTWADYGLTQLTADGFGLKKRTKAGQSWVNIPSGTRA
EGLAYLGGATQGGLAVGLRDFWKRYPVGLDISNAASDTGELTLWLYSPAA
EPLDLRPFHDGLGQDGYEDQLDALEITYEDWEPGFDTPYGIARTSEVYLF
AFDQTPTSDKLASLTAYMNDPPVLVAEPKYIHETQALGEYWALPSASPAA
ATLEDRLQFIFDFYKGQIEQRRWYGFLDYGDFMHTYDPDRHTWRYDVGGY
AWDNSELSPDLFFWLYFLRTGSKDAYRFAEALTRHTGEVDVYHIGDWKGL
GTRHGVQHWSDSAKQARISQPQYRKYFFYLSGGDERVGELLEELLDTDKT
YGELDPQRKVRTDGWEPSPNSTVSFGLGTDWSGLAAGWLIEWERRGPRWE
EAKTKLTNTIAGIANLTNGFVTGSGLYDPVTWTLGPPPSDPGNRGNVSIS
HLNAVFGLPEVVSEAIAYLADDIPKGFKQAWLDYCYYYHASASEQKDRYG
VSFSKISLLQAHSRLAAYAAYETKNKTLALRAWKDFYASDGLLPDAPWNI
THVDGSDVLVPVDEAAWLATNDIAQYGLAVIQNLAYVSDSLDDYQS

Ligand ID

RAM

InChI

InChI=1S/C6H12O5/c1-2-3(7)4(8)5(9)6(10)11-2/h2-10H,1H3/t2-,3-,4+,5+,6+/m0/s1

InChIKey

SHZGCJCMOBCMKK-HGVZOGFYSA-N

SMILES

Software	SMILES
CACTVS 3.341	C[C@@H]1O[C@@H](O)[C@H](O)[C@H](O)[C@H]1O
ACDLabs 10.04	OC1C(O)C(OC(O)C1O)C
OpenEye OEToolkits 1.5.0	C[C@H]1[C@@H]([C@H]([C@H]([C@@H](O1)O)O)O)O
OpenEye OEToolkits 1.5.0	CC1C(C(C(C(O1)O)O)O)O
CACTVS 3.341	C[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O

Formula

C6 H12 O5

Name

alpha-L-rhamnopyranose;
alpha-L-rhamnose;
6-deoxy-alpha-L-mannopyranose;
L-rhamnose;
rhamnose

PDB chain

5xqg Chain I Residue 1 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	5xqg Crystal structure of exo-rhamnogalacturonan lyase from Penicillium chrysogenum as a member of polysaccharide lyase family 26
Resolution	2.74 Å
Binding residue (original residue number in PDB)	D460 R648
Binding residue (residue number reindexed from 1)	D430 R617
Annotation score	4

Enzyme Commision number

	Molecular Function
GO:0046872	metal ion binding

PDB	RCSB:5xqg, PDBe:5xqg, PDBj:5xqg
PDBsum	5xqg
PubMed	29574769
UniProt	B6H7Q7

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Structure of PDB 5xqg Chain A Binding Site BS01