Structure of PDB 5xgu Chain A Binding Site BS01

Receptor Information
>5xgu Chain A (length=631) Species: 868160 (Escherichia coli DEC6A) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
HHHHHHGTVIGHRDGYGFLRVDLYLSSEQMKTCIHGDQVLAQPLGVREAR
IVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGF
VVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA
VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRG
GGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNG
LCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHIL
QGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGIEEAKFIFNAERRI
ERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAI
TSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMK
QAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQG
NTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVG
NVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGE
SSGQTYRLGDRVEVRVEAVNMDERKIDFSLI
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain5xgu Chain A Residue 701 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5xgu Structural insights into RNA unwinding and degradation by RNase R.
Resolution1.846 Å
Binding residue
(original residue number in PDB)		D186 D195
Binding residue
(residue number reindexed from 1)		D182 D191
Annotation score4
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sat Nov 30 15:42:37 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '5xgu', asym_id = 'A', bs = 'BS01', title = 'Structural insights into RNA unwinding and degradation by RNase R.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='5xgu', asym_id='A', bs='BS01', title='Structural insights into RNA unwinding and degradation by RNase R.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003676,0003723,0004518,0004540,0016070', uniprot = '', pdbid = '5xgu', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003676,0003723,0004518,0004540,0016070', uniprot='', pdbid='5xgu', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>