Structure of PDB 5wzp Chain A Binding Site BS01

Receptor Information
>5wzp Chain A (length=603) Species: 1681 (Bifidobacterium bifidum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MMQFTMSGTMLRFDETTLRFSFSRDGATWSGCDGIEPQLTRESFSFAGAA
TVTHERIETGTGVGVRSVFAGFADYAFETYIWIERSSGDVLCEWVPLRID
RVLWPAPLSFDRADAHDVTLITHEQGVMIPNSWPTEVGTDAVSFGGRFET
AGGYMPWFAQLRSDGHAYIAICETPWNAGYDIDHPAGGPYTHVGMWFEPS
LGRMDYRRVVRYRLLDHADHTAICKTYRAYVNERGRLRTLAEKAARNPSV
RDLLGRSWVHVGIKTNVQPDSSFYDPAQPGKNDSLVTFAQRERQMRTLHE
MGAGRLYLHLDGWAQPGYDNGHPDYLPACREAGGWKGMKSLIDACHEQGD
LFGTHDQYRDYYFAARTFDPRNAIRLADGTMPEHAMWAGGRQTYLCAELA
PDYVRRNFSEIATHGIVLDCAYLDVFTCNEGDECSHPEHRMTRRECYERR
AECFEYLLAHGILTSSEEVSDWAVPSLVFCHYAPYDFQMRSPDAPRHGIP
VPLYNLVYHDCVIQPWMMDRVAGGDDYMLYALLNGGAPYLIRDAAYTEND
IERCAVVAGLHRRVGMQELVRHDLVGGDPLVQRSVFADGTAVTCDFHAQT
YEV
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain5wzp Chain A Residue 701 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5wzp The first crystal structure of a family 129 glycoside hydrolase from a probiotic bacterium reveals critical residues and metal cofactors
Resolution2.64 Å
Binding residue
(original residue number in PDB)		C407 C445 H450
Binding residue
(residue number reindexed from 1)		C396 C434 H439
Annotation score4
Enzymatic activity
Enzyme Commision number 3.2.1.-
Gene Ontology
Molecular Function
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0033926 endo-alpha-N-acetylgalactosaminidase activity
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:5wzp, PDBe:5wzp, PDBj:5wzp
PDBsum5wzp
PubMed28546425
UniProtG5ELM1

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