Structure of PDB 5wmm Chain A Binding Site BS01

Receptor Information
>5wmm Chain A (length=870) Species: 349725 (Micromonospora sp. ML1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VGTIPERFAAVVAEQPEAVALVAADGEESWTYGELDRWANRIAHHLHARG
VGRQHRVALVMERSPLLVAAVLGTLKAGACYVPVEPTWPRARIDLVLADL
DPALVIDERLAEEDLTGYPTRPLDTADVGGEHLAYLMYTSGSTGTPKGVE
VSHRNVLSLALDPCWADADHQRVLVHAPPTFDASTYEMWVPLLHGGAAVV
APPGKLDAARLATLIAERGVTALWLPAGLFDLITQHHPKSFVQVREVWAG
GDVLSPAAVRRLVRDDGTLTVVNGYGPTETTTFAARYRMSAPARCKDPLP
IGEPMAGSRLYALDDRLRQVPQGVIGELYVGGDGVARGYANHPPLTSERF
VADPFGRPGERMYRTGDLVRWNHDGQLEFLGRVDEQVKIRGFRVEPGEIR
AALRKRDGVAQAVVVPRTDRLGERRLVAYVVPEVPAGADEDSTEHVEKWR
AIYDSMYDETATEIGNDFTGWKSSYTRDNIPLSEMRRWRDSVVEEVRGLR
ARRILEIGVGSGLLLGPLAPEAEAYWGTDFSLPVIERLEVQVGTDPCLKE
KVSLRCQHADVADGLPVKYFDTVILNSVVQYFPDAAYLSRVLDVALDRLA
PGGRILVGDVRNYGTLREFLTAVHHAQHPQDSASAVRAAVERAVLAEKEL
VIDPDFFTEWARTRPDVVAVDIRLKPGADQNELTRHRYEVILHKQPSQPL
RLADVRTANWGSEVPDLSGLETALARHGGRLRLARIPNARLVSEAVQCGV
PTNVGGTPLDPHELASWGGQRGYSVHCTWSAEAPGWFEAVIIPVDSGHCR
DGVYRPVGPRPRQLVNLPAAARRVSRLPSWLREELAAELPEHLVPGDIVV
MERLPLTTNGKIDHSRLPEV
Ligand information
Ligand IDB6G
InChIInChI=1S/C14H21N6O8P/c1-5(2)6(15)13(23)27-29(24,25)28-14-9(22)8(21)12(26-14)20-4-19-7-10(16)17-3-18-11(7)20/h3-6,8-9,12,14,21-22H,15H2,1-2H3,(H,24,25)(H2,16,17,18)/t6-,8+,9-,12+,14-/m0/s1
InChIKeyPJUFCHCQTYUTMG-JDUCOKCXSA-N
SMILES
SoftwareSMILES
ACDLabs 12.01C1(OC(C(C1O)O)OP(OC(=O)C(C(C)C)N)(O)=O)n2c3c(nc2)c(ncn3)N
OpenEye OEToolkits 2.0.6CC(C)[C@@H](C(=O)OP(=O)(O)O[C@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O)N
OpenEye OEToolkits 2.0.6CC(C)C(C(=O)OP(=O)(O)OC1C(C(C(O1)n2cnc3c2ncnc3N)O)O)N
CACTVS 3.385CC(C)[C@H](N)C(=O)O[P](O)(=O)O[C@@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23
CACTVS 3.385CC(C)[CH](N)C(=O)O[P](O)(=O)O[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23
FormulaC14 H21 N6 O8 P
Name(2S)-2-amino-3-methylbutanoyl (2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl hydrogen (S)-phosphate
ChEMBL
DrugBank
ZINC
PDB chain5wmm Chain A Residue 1001 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5wmm Structural basis for backbone N-methylation by an interrupted adenylation domain.
Resolution2.9 Å
Binding residue
(original residue number in PDB)
F212 D213 W255 G282 D283 V284 Y306 G307 T309 T313 D398 F410 R413 K419 R424
Binding residue
(residue number reindexed from 1)
F181 D182 W224 G251 D252 V253 Y275 G276 T278 T282 D367 F379 R382 K388 R393
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) T170 L190 T309 E310 K419 R424 K895
Catalytic site (residue number reindexed from 1) T139 L159 T278 E279 K388 R393 K861
Enzyme Commision number ?
External links